RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 ZNF581Q9P0T4 197 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 UQCR10Q9UDW1 63 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 WDR83OSQ9Y284 106 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 PSPNO60542 156 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 WISP1O95388 367 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 FOXF2Q12947 444 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 A6NDN8 102 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 ID1P41134 155 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 GLRX5Q86SX6 157 aa12.32□□□□□ -0.44
PTPRU-205ENST00000460170 PF4V1P10720 104 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 SRRM5B3KS81 715 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 OR9G9P0C7N8 305 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 RPS20P60866 119 aaKnown RBP12.31□□□□□ -0.44
PTPRU-205ENST00000460170 HGFACQ04756 655 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 SCGB1D4Q6XE38 83 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 VSIRQ9H7M9 311 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 KIAA2026Q5HYC2 2103 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 PEX7O00628 323 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 CIDEAO60543 219 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 KLRB1Q12918 225 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 ASCL4Q6XD76 172 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 NEU1Q99519 415 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 NBASA2RRP1 2371 aa12.31□□□□□ -0.44
PTPRU-205ENST00000460170 C1QTNF9BB2RNN3 333 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 E9PLN8 166 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 FOLR2P14207 255 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 A0A1W2PS18 150 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 C5orf24Q7Z6I8 188 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 OR10J6PQ8NGY7 276 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 GSN-AS1Q9NRJ2 163 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 PLSCR4Q9NRQ2 329 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 HELZP42694 1942 aaKnown RBP12.3□□□□□ -0.44
PTPRU-205ENST00000460170 TRBV6-6A0A0A6YYG2 114 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 FAM90A9PA6NNJ1 464 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 HERVK_113P61574 105 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 HBBP68871 147 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 IMMP2LQ96T52 175 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 CACNA1HO95180 2353 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 LYL1P12980 280 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 CSRP1P21291 193 aaKnown RBP12.3□□□□□ -0.44
PTPRU-205ENST00000460170 RPL13AP40429 203 aaKnown RBP12.3□□□□□ -0.44
PTPRU-205ENST00000460170 RAB9AP51151 201 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 MDS2Q8NDY4 140 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 OR52E5Q8NH55 327 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 DOCK9Q9BZ29 2069 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 COLCA2A8K830 154 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 IGKV1-5P01602 117 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 HTN1P15515 57 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 RPL24P83731 157 aaKnown RBP12.3□□□□□ -0.44
PTPRU-205ENST00000460170 DGAT2L7PQ6IED9 249 aa12.3□□□□□ -0.44
PTPRU-205ENST00000460170 CGB1A6NKQ9 187 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 PET117Q6UWS5 81 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 Q6ZS49 121 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 ZNF738Q8NE65 137 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 FRMPD3Q5JV73 1810 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 TRAV9-1A0A075B6T8 112 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 TRAV1-1A0A0B4J248 108 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 LILRA1O75019 489 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 ZCCHC24Q8N2G6 241 aaKnown RBP12.29□□□□□ -0.44
PTPRU-205ENST00000460170 CBLN4Q9NTU7 201 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 INTS1Q8N201 2190 aaKnown RBP12.29□□□□□ -0.44
PTPRU-205ENST00000460170 IGHV3-35A0A0C4DH35 117 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 TBR1Q16650 682 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 TAS2R60P59551 318 aa12.29□□□□□ -0.44
PTPRU-205ENST00000460170 NMUP48645 174 aa12.28□□□□□ -0.44
PTPRU-205ENST00000460170 MBNL2Q5VZF2 373 aaKnown RBP12.28□□□□□ -0.44
PTPRU-205ENST00000460170 HEPN1Q6WQI6 88 aa12.28□□□□□ -0.44
PTPRU-205ENST00000460170 A0A1B0GW64 132 aa12.28□□□□□ -0.44
PTPRU-205ENST00000460170 C1QTNF9P0C862 333 aa12.28□□□□□ -0.44
PTPRU-205ENST00000460170 ZNF407Q9C0G0 2248 aa12.28□□□□□ -0.44
PTPRU-205ENST00000460170 HINT1P49773 126 aaPredicted RBP12.28□□□□□ -0.44
PTPRU-205ENST00000460170 RELQ04864 619 aaPredicted RBP12.28□□□□□ -0.44
PTPRU-205ENST00000460170 REC114Q7Z4M0 266 aa12.28□□□□□ -0.44
PTPRU-205ENST00000460170 C1orf147Q96MC9 270 aaPredicted RBP12.28□□□□□ -0.44
PTPRU-205ENST00000460170 GFRA3O60609 400 aa12.27□□□□□ -0.44
PTPRU-205ENST00000460170 IGHV1-46P01743 117 aa12.27□□□□□ -0.44
PTPRU-205ENST00000460170 ANOS1P23352 680 aa12.27□□□□□ -0.44
PTPRU-205ENST00000460170 PRCDQ00LT1 54 aa12.27□□□□□ -0.44
PTPRU-205ENST00000460170 GCSAMLQ5JQS6 135 aa12.27□□□□□ -0.44
PTPRU-205ENST00000460170 SAPCD1Q5SSQ6 148 aa12.27□□□□□ -0.44
PTPRU-205ENST00000460170 HIST1H2BKO60814 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BJP06899 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BOP23527 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BBP33778 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 FOXA3P55318 350 aaPredicted RBP12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BDP58876 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BCP62807 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST2H2BEQ16778 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.27□□□□□ -0.45
PTPRU-205ENST00000460170 LYRM7Q5U5X0 104 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BHQ93079 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BNQ99877 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 HIST1H2BMQ99879 126 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 COL25A1Q9BXS0 654 aaPredicted RBP12.27□□□□□ -0.45
PTPRU-205ENST00000460170 Q6P435 159 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 OR10AG1Q8NH19 301 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 FER1L5A0AVI2 2057 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 PLXND1Q9Y4D7 1925 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 TANC1Q9C0D5 1861 aa12.27□□□□□ -0.45
PTPRU-205ENST00000460170 TM4SF20Q53R12 229 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms