RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 AKIRIN2Q53H80 203 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 C10orf55Q5SWW7 151 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 LYZL2Q7Z4W2 148 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 HSD17B13Q7Z5P4 300 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-214ENST00000454018 OR1L8Q8NGR8 309 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 NOL4LQ96MY1 436 aaPredicted RBP6.88□□□□□ -1.31
SYNE1-214ENST00000454018 SRSF8Q9BRL6 282 aaKnown RBP6.88□□□□□ -1.31
SYNE1-214ENST00000454018 FAM103A1Q9BTL3 118 aaKnown RBP6.88□□□□□ -1.31
SYNE1-214ENST00000454018 PDCD10Q9BUL8 212 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 KRTAP4-6Q9BYQ5 205 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 CACNG5Q9UF02 275 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 NSG2Q9Y328 171 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 FBXO7Q9Y3I1 522 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 OR51B2Q9Y5P1 312 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 WNK1Q9H4A3 2382 aa6.88□□□□□ -1.31
SYNE1-214ENST00000454018 A0A0B4J293 547 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 A0A1B0GU03 582 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 C7orf66A4D0T2 115 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 DBX1A6NMT0 343 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 IFNA21P01568 189 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 PRCDQ00LT1 54 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 CFHR3Q02985 330 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 SMCO1Q147U7 214 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 TATDN3Q17R31 274 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 IZUMO4Q1ZYL8 232 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 UNQ5815/PRO19632Q6UWF5 114 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 C12orf45Q8N5I9 185 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-214ENST00000454018 COMMD1Q8N668 190 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 LFNGQ8NES3 379 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 OR4X2Q8NGF9 303 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 OR5M8Q8NGP6 311 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 WIPF2Q8TF74 440 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-214ENST00000454018 GPR146Q96CH1 333 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-214ENST00000454018 LINC00527Q9UJ94 153 aa6.87□□□□□ -1.31
SYNE1-214ENST00000454018 A0A1W2PN81 502 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 MSGN1A6NI15 193 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 B5MCH6 92 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 TEX22C9J3V5 150 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 G3V318 75 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 ST8SIA3O43173 380 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 SCGB1D1O95968 90 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 IGHG4P01861 327 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 HOXB5P09067 269 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 TRAPPC2P0DI81 140 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 TRAPPC2BP0DI82 140 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 EGR2P11161 476 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 CHRNA7P36544 502 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 HSPE1P61604 102 aaKnown RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 PDLIM3Q53GG5 364 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 GGNBP1Q5YKI7 109 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 DGAT2L7PQ6IED9 249 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 CENPVQ7Z7K6 275 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 OR52E5Q8NH55 327 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 FYTTD1Q96QD9 318 aaKnown RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 PLEKHA3Q9HB20 300 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 NDUFA4L2Q9NRX3 87 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 WSB1Q9Y6I7 421 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 TEX50A0A1B0GTY4 177 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 A0A1B0GW64 132 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 IGLC7A0M8Q6 106 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 CGB1A6NKQ9 187 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 NPIPB5A8MRT5 1133 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 FAM90A26D6RGX4 464 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 H3BUA1 57 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 ADAP1O75689 374 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 IFNA17P01571 189 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 OPN1MWP04001 364 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 OPN1MW2P0DN77 364 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 OPN1MW3P0DN78 364 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 MYOD1P15172 320 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 PPIFP30405 207 aaKnown RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 SPCS3P61009 180 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 RPP30P78346 268 aaKnown RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 FOXE3Q13461 319 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 ASPHD1Q5U4P2 390 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 TEX38Q6PEX7 206 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 C12orf54Q6X4T0 127 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 Q6ZRM9 215 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 OR5AU1Q8NGC0 362 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 OR1S1Q8NH92 325 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 FAM110DQ8TAY7 271 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-214ENST00000454018 SPATA25Q9BR10 227 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 HINT2Q9BX68 163 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 HSPB7Q9UBY9 170 aa6.86□□□□□ -1.31
SYNE1-214ENST00000454018 E7EUB6 86 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 INS-IGF2F8WCM5 200 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 PITX3O75364 302 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 BRI3O95415 125 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 PLA2G1BP04054 148 aaKnown RBP6.85□□□□□ -1.31
SYNE1-214ENST00000454018 ELANEP08246 267 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 APELAP0DMC3 54 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 PSMB8P28062 276 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 HOXA1P49639 335 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-214ENST00000454018 TNFRSF9Q07011 255 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 CXorf66Q5JRM2 361 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-214ENST00000454018 ZNF329Q86UD4 541 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 TTC9CQ8N5M4 171 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 UXS1Q8NBZ7 420 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 SLA2Q9H6Q3 261 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms