RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	GDPD1	Q8N9F7	314 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	UBAC2	Q8NBM4	344 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	UXS1	Q8NBZ7	420 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	OR2K2	Q8NGT1	345 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	ZNF502	Q8TBZ5	544 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	SPATA25	Q9BR10	227 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	SRD5A3	Q9H8P0	318 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	SCPEP1	Q9HB40	452 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	EXTL2	Q9UBQ6	330 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	KLK11	Q9UBX7	282 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	MLX	Q9UH92	298 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	CEPT1	Q9Y6K0	416 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	CSMD3	Q7Z407	3707 aa		6.54	□□□□□ -1.36
RFX3-209	ENST00000451859	RYR2	Q92736	4967 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859		A8MZ25	164 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	OR11H12	B2RN74	326 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	LGALS9	O00182	355 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	CYB5B	O43169	146 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	TGOLN2	O43493	480 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	ZNF207	O43670	478 aa	Known RBP	6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	GABARAP	O95166	117 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	IFNA6	P05013	189 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	SERPINE2	P07093	398 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	LYL1	P12980	280 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	ADM	P35318	185 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	MFAP2	P55001	183 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	CTF1	Q16619	201 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	SPINK9	Q5DT21	86 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	RNASE10	Q5GAN6	216 aa	Known RBP	6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	CASC10	Q5T4H9	136 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	ZNF57	Q68EA5	555 aa	Predicted RBP	6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	H2BFWT	Q7Z2G1	175 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	WFDC3	Q8IUB2	231 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	SLC38A6	Q8IZM9	456 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	OR52I2	Q8NH67	350 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	OR4A16	Q8NH70	328 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	AP3S1	Q92572	193 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	LSM10	Q969L4	123 aa	Known RBP	6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	MRGPRF	Q96AM1	343 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	ISOC1	Q96CN7	298 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	CMTM3	Q96MX0	182 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	SRSF8	Q9BRL6	282 aa	Known RBP	6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	C20orf24	Q9BUV8	137 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	NDUFA4L2	Q9NRX3	87 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	GAR1	Q9NY12	217 aa	Known RBP	6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	THYN1	Q9P016	225 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	PRND	Q9UKY0	176 aa		6.53	□□□□□ -1.36
RFX3-209	ENST00000451859	LYST	Q99698	3801 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	RBMY1B	A6NDE4	496 aa	Known RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	RBMY1E	A6NEQ0	496 aa	Known RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	C15orf61	A6NNL5	157 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859		A8MWP6	167 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	RGS5	O15539	181 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	IGKV1-39	P01597	117 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	IGHV3-48	P01763	117 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	IGKV1D-39	P04432	117 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	RBMY1D	P0C7P1	496 aa	Known RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	ZNF182	P17025	639 aa	Predicted RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	IZUMO4	Q1ZYL8	232 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859		Q56UQ5	140 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	THOC7	Q6I9Y2	204 aa	Known RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	LPCAT3	Q6P1A2	487 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	SLC16A13	Q7RTY0	426 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	GPR141	Q7Z602	305 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	LAX1	Q8IWV1	398 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	OR52B4	Q8NGK2	314 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	MISP3	Q96FF7	219 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	TMEM56	Q96MV1	263 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	CITED4	Q96RK1	184 aa		6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	TECR	Q9NZ01	308 aa	Known RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	F11R	Q9Y624	299 aa	Known RBP	6.52	□□□□□ -1.37
RFX3-209	ENST00000451859	CD3D	P04234	171 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	PTBP1	P26599	531 aa	Known RBP eCLIP	6.51	□□□□□ -1.37	3e-8	■■■■■ 30.9
RFX3-209	ENST00000451859	AKR1C2	P52895	323 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	PIGP	P57054	158 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	SPCS2	Q15005	226 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	KLK9	Q2XQG4	91 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	SCGB2B2	Q4G0G5	96 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	FAAP20	Q6NZ36	180 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	RBPMS2	Q6ZRY4	209 aa	Known RBP	6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	OR4D10	Q8NGI6	311 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	VN1R17P	Q8TDU5	208 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	SCARB1	Q8WTV0	552 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	TMEM190	Q8WZ59	177 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	PINX1	Q96BK5	328 aa	Known RBP	6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	SEC22A	Q96IW7	307 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	TSC22D3	Q99576	134 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	CHRDL1	Q9BU40	450 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	MRPS26	Q9BYN8	205 aa	Known RBP	6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	TMEM14B	Q9NUH8	114 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	FKBP11	Q9NYL4	201 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	C21orf62	Q9NYP8	219 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	UBQLN2	Q9UHD9	624 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	KLK9	Q9UKQ9	250 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	UFC1	Q9Y3C8	167 aa		6.51	□□□□□ -1.37
RFX3-209	ENST00000451859	IGHV3-49	A0A0A0MS15	119 aa		6.5	□□□□□ -1.37
RFX3-209	ENST00000451859		K7EIM0	57 aa		6.5	□□□□□ -1.37
RFX3-209	ENST00000451859	FGF2	P09038	288 aa		6.5	□□□□□ -1.37
RFX3-209	ENST00000451859	UCP3	P55916	312 aa		6.5	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms