RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 SNCAP37840 140 aa14.4□□□□□ -0.1
HDAC6-208ENST00000438518 SRSF4Q08170 494 aaKnown RBP14.4□□□□□ -0.1
HDAC6-208ENST00000438518 C2orf68Q2NKX9 166 aa14.4□□□□□ -0.1
HDAC6-208ENST00000438518 CXorf66Q5JRM2 361 aaPredicted RBP14.4□□□□□ -0.1
HDAC6-208ENST00000438518 ZNF329Q86UD4 541 aa14.4□□□□□ -0.1
HDAC6-208ENST00000438518 OR1P1Q8NH06 330 aa14.4□□□□□ -0.1
HDAC6-208ENST00000438518 RBKSQ9H477 322 aa14.4□□□□□ -0.1
HDAC6-208ENST00000438518 HEYLQ9NQ87 328 aaPredicted RBP14.4□□□□□ -0.1
HDAC6-208ENST00000438518 F11RQ9Y624 299 aaKnown RBP14.4□□□□□ -0.1
HDAC6-208ENST00000438518 U3KQ87 197 aa14.4□□□□□ -0.1
HDAC6-208ENST00000438518 CORTO00230 105 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 SOX15O60248 233 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 APELAP0DMC3 54 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 RPP30P78346 268 aaKnown RBP14.39□□□□□ -0.11
HDAC6-208ENST00000438518 IL15RAQ13261 267 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 BSXQ3C1V8 233 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 TMEM65Q6PI78 240 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 OR5T1Q8NG75 326 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 RAB40CQ96S21 281 aa14.39□□□□□ -0.11
HDAC6-208ENST00000438518 FAM223BA6NKX1 122 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 NXPH3O95157 252 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 PF4V1P10720 104 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 H2BFSP57053 126 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 TAS2R30P59541 319 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 FCN2Q15485 313 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 FAM223AQ8IWN6 122 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 SLC24A4Q8NFF2 622 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 ZNF355PQ9NSJ1 428 aa14.38□□□□□ -0.11
HDAC6-208ENST00000438518 IGLV11-55A0A075B6I3 123 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 TRBV9A0A0B4J1U6 114 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 A0A0G2JLM5 398 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 SCGB1D2O95969 90 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 MBPP02686 304 aaPredicted RBP14.37□□□□□ -0.11
HDAC6-208ENST00000438518 PET100P0DJ07 73 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 PVALBP20472 110 aaPredicted RBP14.37□□□□□ -0.11
HDAC6-208ENST00000438518 RAB9AP51151 201 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 SPINK9Q5DT21 86 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 C12orf54Q6X4T0 127 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 NECAP1Q8NC96 275 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 OR11H7Q8NGC8 314 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 MYOZ3Q8TDC0 251 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 USMG5Q96IX5 58 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 P2RX4Q99571 388 aa14.37□□□□□ -0.11
HDAC6-208ENST00000438518 SCAF4O95104 1147 aaKnown RBP14.36□□□□□ -0.11
HDAC6-208ENST00000438518 SIX6O95475 246 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 RLN2P04090 185 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 REG1AP05451 166 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 GIPP09681 153 aaPredicted RBP14.36□□□□□ -0.11
HDAC6-208ENST00000438518 CXCL3P19876 107 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 POLR2GP62487 172 aaKnown RBP eCLIP14.36□□□□□ -0.11
HDAC6-208ENST00000438518 C2orf83Q53S99 150 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 FAM209BQ5JX69 171 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 PVRIGQ6DKI7 326 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 ZNF747Q9BV97 191 aa14.36□□□□□ -0.11
HDAC6-208ENST00000438518 ZNF436Q9C0F3 470 aaPredicted RBP14.36□□□□□ -0.11
HDAC6-208ENST00000438518 K7EPK0 472 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 SSSCA1O60232 199 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 TSC22D2O75157 780 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 TRGV3P03979 118 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 RNASE2P10153 161 aaKnown RBP14.35□□□□□ -0.11
HDAC6-208ENST00000438518 NPY1RP25929 384 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 TPPP2P59282 170 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 CD83Q01151 205 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 EXOSC2Q13868 293 aaKnown RBP14.35□□□□□ -0.11
HDAC6-208ENST00000438518 SMIM8Q96KF7 97 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 UBE2E2Q96LR5 201 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 MAGT1Q9H0U3 335 aa14.35□□□□□ -0.11
HDAC6-208ENST00000438518 RCL1Q9Y2P8 373 aaKnown RBP14.35□□□□□ -0.11
HDAC6-208ENST00000438518 TSSC4Q9Y5U2 329 aaPredicted RBP14.35□□□□□ -0.11
HDAC6-208ENST00000438518 L7N2F9 121 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 IFNA10P01566 189 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 CDX1P47902 265 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-208ENST00000438518 RAP2BP61225 183 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 RAB11AP62491 216 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 RPL23AP62750 156 aaKnown RBP14.34□□□□□ -0.11
HDAC6-208ENST00000438518 VAMP2P63027 116 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 FGL1Q08830 312 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 RAB32Q13637 225 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 SLC25A24Q6NUK1 477 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 C10orf99Q6UWK7 81 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 RNASEH2CQ8TDP1 164 aaKnown RBP14.34□□□□□ -0.11
HDAC6-208ENST00000438518 PPP1R1CQ8WVI7 109 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 CXorf58Q96LI9 332 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 FANCD2OSQ96PS1 177 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 CITED1Q99966 193 aa14.34□□□□□ -0.11
HDAC6-208ENST00000438518 LSM5Q9Y4Y9 91 aaKnown RBP14.34□□□□□ -0.11
HDAC6-208ENST00000438518 IAPPP10997 89 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 S100A10P60903 97 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 RHOGP84095 191 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 TCTEX1D4Q5JR98 221 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 NDUFA11Q86Y39 141 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 C3orf56Q8N813 242 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 VN1R17PQ8TDU5 208 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 CHAC2Q8WUX2 184 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 MS4A10Q96PG2 267 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 ATP6V0BQ99437 205 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 PSENENQ9NZ42 101 aa14.33□□□□□ -0.12
HDAC6-208ENST00000438518 STRAPQ9Y3F4 350 aaKnown RBP14.33□□□□□ -0.12
HDAC6-208ENST00000438518 FBN1P35555 2871 aaKnown RBP14.33□□□□□ -0.12
HDAC6-208ENST00000438518 TCRBV4S1A1TA0A5B7 111 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms