RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SCGB3A2Q96PL1 93 aa11.57□□□□□ -0.56
LIMS3-201ENST00000437679 RTBDNQ9BSG5 229 aaPredicted RBP11.57□□□□□ -0.56
LIMS3-201ENST00000437679 THAP7Q9BT49 309 aaPredicted RBP11.57□□□□□ -0.56
LIMS3-201ENST00000437679 MCUBQ9NWR8 336 aa11.57□□□□□ -0.56
LIMS3-201ENST00000437679 LGALS9O00182 355 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 IGKV1-5P01602 117 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 UCP1P25874 307 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 GPR183P32249 361 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 FAUP35544 74 aaKnown RBP11.56□□□□□ -0.56
LIMS3-201ENST00000437679 PRCDQ00LT1 54 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 IZUMO4Q1ZYL8 232 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 LCN12Q6JVE5 192 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 C5orf66Q9H5L9 145 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 NAA60Q9H7X0 242 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 SLC2A8Q9NY64 477 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 GPR132Q9UNW8 380 aa11.56□□□□□ -0.56
LIMS3-201ENST00000437679 ZNF320A2RRD8 509 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 OR5AC1P0C628 307 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 AP3S2P59780 193 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 ERHP84090 104 aaKnown RBP11.55□□□□□ -0.56
LIMS3-201ENST00000437679 DHODHQ02127 395 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 PLET1Q6UQ28 207 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 Q8N402 240 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 OR2C3Q8N628 320 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 OR2K2Q8NGT1 345 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 OR1P1Q8NH06 330 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 DYNLRB2Q8TF09 96 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 PDCD10Q9BUL8 212 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 TMEM222Q9H0R3 208 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 PLEKHA3Q9HB20 300 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 ZC4H2Q9NQZ6 224 aa11.55□□□□□ -0.56
LIMS3-201ENST00000437679 CRYM-AS1A6NIL9 109 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 C2orf70A6NJV1 201 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 IFNA17P01571 189 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 P0C879 139 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 NHLRC4P0CG21 123 aaPredicted RBP11.54□□□□□ -0.56
LIMS3-201ENST00000437679 MFAP2P55001 183 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 SLC35G3Q8N808 338 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 C21orf62Q9NYP8 219 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 V9GYH0 126 aa11.54□□□□□ -0.56
LIMS3-201ENST00000437679 IGHV3-21A0A0B4J1V1 117 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 A0A0B4J293 547 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 ST8SIA3O43173 380 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 TGOLN2O43493 480 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 CDS2O95674 445 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 FOLR2P14207 255 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 SPANXN2Q5MJ10 180 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 CCDC190Q86UF4 302 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 FAM219AQ8IW50 185 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 SGPP2Q8IWX5 399 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 TOMM5Q8N4H5 51 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 ZNF114Q8NC26 417 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 SCARB1Q8WTV0 552 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 GLYATL2Q8WU03 294 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 RBPMSQ93062 196 aaKnown RBP11.53□□□□□ -0.56
LIMS3-201ENST00000437679 MISP3Q96FF7 219 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 BSCL2Q96G97 398 aaPredicted RBP11.53□□□□□ -0.56
LIMS3-201ENST00000437679 ATP6V0BQ99437 205 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 PALMDQ9NP74 551 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 KCNIP3Q9Y2W7 256 aa11.53□□□□□ -0.56
LIMS3-201ENST00000437679 OR2T8A6NH00 312 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 K7EIM0 57 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 KLF9Q13886 244 aaPredicted RBP11.52□□□□□ -0.57
LIMS3-201ENST00000437679 ZNF79Q15937 498 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 Q56UQ5 140 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 SPINK9Q5DT21 86 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 C11orf87Q6NUJ2 197 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 SPSB3Q6PJ21 355 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 ADAMTSL5Q6ZMM2 481 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 GTSCR1Q86UQ5 136 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 SELENOHQ8IZQ5 122 aaKnown RBP11.52□□□□□ -0.57
LIMS3-201ENST00000437679 UBAC2Q8NBM4 344 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 TRIM63Q969Q1 353 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 ASCL2Q99929 193 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 ENY2Q9NPA8 101 aa11.52□□□□□ -0.57
LIMS3-201ENST00000437679 GAR1Q9NY12 217 aaKnown RBP11.52□□□□□ -0.57
LIMS3-201ENST00000437679 TECRQ9NZ01 308 aaKnown RBP11.52□□□□□ -0.57
LIMS3-201ENST00000437679 A0A0G2JRQ6 117 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 IZUMO1RA6ND01 250 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 A8MWP6 167 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 CBLN1P23435 193 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 SNCAP37840 140 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 ETV6P41212 452 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 DEFB114Q30KQ6 69 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 CD300EQ496F6 205 aaPredicted RBP11.51□□□□□ -0.57
LIMS3-201ENST00000437679 TMEM268Q5VZI3 342 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 Q8N1Y9 231 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 LHFPL5Q8TAF8 219 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 DEDD2Q8WXF8 326 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.51□□□□□ -0.57
LIMS3-201ENST00000437679 NDUFA13Q9P0J0 144 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 UFC1Q9Y3C8 167 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 COL7A1Q02388 2944 aa11.51□□□□□ -0.57
LIMS3-201ENST00000437679 IGHV3-35A0A0C4DH35 117 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 TMEM213A2RRL7 107 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 INS-IGF2F8WCM5 200 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 AKR1C4P17516 323 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 EDN2P20800 178 aa11.5□□□□□ -0.57
LIMS3-201ENST00000437679 HOXA1P49639 335 aaPredicted RBP11.5□□□□□ -0.57
LIMS3-201ENST00000437679 SUB1P53999 127 aaKnown RBP eCLIP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms