RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 GALNT14Q96FL9 552 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 DMRT1Q9Y5R6 373 aa14.33□□□□□ -0.12
SHH-203ENST00000435425 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.32□□□□□ -0.12
SHH-203ENST00000435425 MFSD2BA6NFX1 497 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 SAP30O75446 220 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 ANXA3P12429 323 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 CLEC19AQ6UXS0 136 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 Q6ZRM9 215 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 ZNF429Q86V71 674 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 SLC35G3Q8N808 338 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 PLEKHA3Q9HB20 300 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 AURKAIP1Q9NWT8 199 aaPredicted RBP14.32□□□□□ -0.12
SHH-203ENST00000435425 THYN1Q9P016 225 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 F11RQ9Y624 299 aaKnown RBP14.32□□□□□ -0.12
SHH-203ENST00000435425 TMEM56-RWDD3S4R434 201 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 NOTCH1P46531 2555 aa14.32□□□□□ -0.12
SHH-203ENST00000435425 IGHV3-21A0A0B4J1V1 117 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 BMPR1BO00238 502 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 VAMP1P23763 118 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 MFAP2P55001 183 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 SYNJ2BPP57105 145 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 RBMS2Q15434 407 aaKnown RBP14.31□□□□□ -0.12
SHH-203ENST00000435425 FAM219AQ8IW50 185 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 CENPSQ8N2Z9 138 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 ZC4H2Q9NQZ6 224 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 BATF3Q9NR55 127 aa14.31□□□□□ -0.12
SHH-203ENST00000435425 WIPF1O43516 503 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 NXPH3O95157 252 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 HLA-AP01891 365 aaKnown RBP14.3□□□□□ -0.12
SHH-203ENST00000435425 ERHP84090 104 aaKnown RBP14.3□□□□□ -0.12
SHH-203ENST00000435425 KLF5Q13887 457 aaPredicted RBP14.3□□□□□ -0.12
SHH-203ENST00000435425 KLK9Q2XQG4 91 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 PDLIM3Q53GG5 364 aaPredicted RBP14.3□□□□□ -0.12
SHH-203ENST00000435425 TMEM128Q5BJH2 165 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 ACSM6Q6P461 480 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 LGI3Q8N145 548 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 OR2C3Q8N628 320 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 CXorf58Q96LI9 332 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 CCDC140Q96MF4 163 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.3□□□□□ -0.12
SHH-203ENST00000435425 PTTG2Q9NZH5 202 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 CACNG5Q9UF02 275 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 KLK9Q9UKQ9 250 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 FLVCR2Q9UPI3 526 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 MEGF8Q7Z7M0 2845 aa14.3□□□□□ -0.12
SHH-203ENST00000435425 NDUFB6O95139 128 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 ARL3P36405 182 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 HOXA1P49639 335 aaPredicted RBP14.29□□□□□ -0.12
SHH-203ENST00000435425 EGFEM1PQ0D2K5 195 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 TATDN3Q17R31 274 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 LYZL2Q7Z4W2 148 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 S100ZQ8WXG8 99 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 IL22RA2Q969J5 263 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 MISP3Q96FF7 219 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 OR4C12Q96R67 309 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 C7orf50Q9BRJ6 194 aaKnown RBP14.29□□□□□ -0.12
SHH-203ENST00000435425 ELOVL1Q9BW60 279 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 ENY2Q9NPA8 101 aa14.29□□□□□ -0.12
SHH-203ENST00000435425 TRBV7-1A0A0A6YYK4 115 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 OR2C1O95371 312 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 CLEC3BP05452 202 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 PPP1R1AQ13522 171 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 FAM209BQ5JX69 171 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 LINC00299Q6ZSB3 139 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 REC114Q7Z4M0 266 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 OR1L6Q8NGR2 347 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 MRAPQ8TCY5 172 aa14.28□□□□□ -0.12
SHH-203ENST00000435425 A0A0B4J2A0 478 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 PLA2G10O15496 165 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 GGCTO75223 188 aaKnown RBP14.27□□□□□ -0.13
SHH-203ENST00000435425 SFT2D2O95562 160 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 GPR183P32249 361 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 BTCP35070 178 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 SNCAP37840 140 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 INSL3P51460 131 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 SRPXP78539 464 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 ANKRD55Q3KP44 614 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 HAPLN4Q86UW8 402 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 OR9G4Q8NGQ1 327 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 OR1P1Q8NH06 330 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 ZNF502Q8TBZ5 544 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 SHPKQ9UHJ6 478 aa14.27□□□□□ -0.13
SHH-203ENST00000435425 WI2-2373I1.2A0A1W2PRP0 233 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 LYRM1O43325 122 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 SULT1A3P0DMM9 295 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 SULT1A4P0DMN0 295 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 UBAC2Q8NBM4 344 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 VN1R17PQ8TDU5 208 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 SCARB1Q8WTV0 552 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 PINX1Q96BK5 328 aaKnown RBP14.26□□□□□ -0.13
SHH-203ENST00000435425 CCDC32Q9BV29 185 aa14.26□□□□□ -0.13
SHH-203ENST00000435425 ZMAT5Q9UDW3 170 aaKnown RBP14.26□□□□□ -0.13
SHH-203ENST00000435425 CEBPZOSA8MTT3 80 aa14.25□□□□□ -0.13
SHH-203ENST00000435425 LY86O95711 162 aa14.25□□□□□ -0.13
SHH-203ENST00000435425 IGHV3-48P01763 117 aa14.25□□□□□ -0.13
SHH-203ENST00000435425 SPCS3P61009 180 aa14.25□□□□□ -0.13
SHH-203ENST00000435425 PRR25Q96S07 402 aa14.25□□□□□ -0.13
SHH-203ENST00000435425 C21orf62Q9NYP8 219 aa14.25□□□□□ -0.13
SHH-203ENST00000435425 IGHV3-35A0A0C4DH35 117 aa14.24□□□□□ -0.13
SHH-203ENST00000435425 OR2T8A6NH00 312 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms