RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 RGPD1P0DJD0 1748 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 COL18A1P39060 1754 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 PAPPA2Q9BXP8 1791 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 TRAPPC8Q9Y2L5 1435 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 PXDNLA1KZ92 1463 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 FANCAO15360 1455 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 CSPG4Q6UVK1 2322 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 TRBV24-1A0A075B6N3 115 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 IGHV1-69-2A0A0G2JMI3 117 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 GOLGA6L4A6NEF3 574 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 SLC25A20O43772 301 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 SH2D1AO60880 128 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 APOMO95445 188 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 HLA-DRB1P01911 266 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 TTRP02766 147 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 CD7P09564 240 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 KCNE1P15382 129 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 HIST1H1TP22492 207 aaPredicted RBP2.07□□□□□ -2.08
USP40-204ENST00000427947 AKR1C2P52895 323 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 GRK1Q15835 563 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 IGFBP7Q16270 282 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 PLPPR5Q32ZL2 321 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 C10orf91Q5T1B1 145 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 TMPPEQ6ZT21 453 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 SCXQ7RTU7 201 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 DAND5Q8N907 189 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 ZNF680Q8NEM1 530 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 KLF14Q8TD94 323 aaPredicted RBP2.07□□□□□ -2.08
USP40-204ENST00000427947 LMX1AQ8TE12 382 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 RASSF5Q8WWW0 418 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 ACOT12Q8WYK0 555 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 RAD51AP1Q96B01 352 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 TMEM147Q9BVK8 224 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 RNASE7Q9H1E1 156 aaKnown RBP2.07□□□□□ -2.08
USP40-204ENST00000427947 CISHQ9NSE2 258 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 PAQR5Q9NXK6 330 aaPredicted RBP2.07□□□□□ -2.08
USP40-204ENST00000427947 MRPL27Q9P0M9 148 aaKnown RBP2.07□□□□□ -2.08
USP40-204ENST00000427947 HHLA2Q9UM44 414 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 SNX12Q9UMY4 172 aa2.07□□□□□ -2.08
USP40-204ENST00000427947 YTHDC2Q9H6S0 1430 aaKnown RBP2.07□□□□□ -2.08
USP40-204ENST00000427947 BAZ2AQ9UIF9 1905 aaKnown RBP2.07□□□□□ -2.08
USP40-204ENST00000427947 LAMA5O15230 3695 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 GLI3P10071 1580 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 SAMD9Q5K651 1589 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 HECW1Q76N89 1606 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 MED13LQ71F56 2210 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 MDN1Q9NU22 5596 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 IGKV1OR2-108A0A075B7D4 117 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 hADV38S2A0JD32 116 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 FAM159BA6NKW6 160 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 FAAHO00519 579 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 ATG12O94817 140 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 FSTL3O95633 263 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 IGHG2P01859 326 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 CRYGDP07320 174 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 OPRM1P35372 400 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 TAS2R41P59536 307 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 DEFA3P59666 94 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 RPS20P60866 119 aaKnown RBP2.06□□□□□ -2.08
USP40-204ENST00000427947 SNRPD2P62316 118 aaKnown RBP2.06□□□□□ -2.08
USP40-204ENST00000427947 IL15RAQ13261 267 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 POU6F1Q14863 301 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 OR8G1Q15617 311 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 AMTNQ6UX39 209 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 SLC36A1Q7Z2H8 476 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 LYG2Q86SG7 212 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 ZNF676Q8N7Q3 588 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 OR2D3Q8NGH3 330 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 OR4X1Q8NH49 305 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 RPS4Y2Q8TD47 263 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 NMNAT3Q96T66 252 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 KLF6Q99612 283 aaPredicted RBP2.06□□□□□ -2.08
USP40-204ENST00000427947 MGLLQ99685 303 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 NIPSNAP1Q9BPW8 284 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 COMMD5Q9GZQ3 224 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 PRTFDC1Q9NRG1 225 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 UQCC1Q9NVA1 299 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 OR5V1Q9UGF6 321 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 LINC00588Q9Y4M8 146 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 EIF3AQ14152 1382 aaKnown RBP2.06□□□□□ -2.08
USP40-204ENST00000427947 MTUS2Q5JR59 1369 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 ANKRD30AQ9BXX3 1397 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 MAGI2Q86UL8 1455 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 ARHGAP35Q9NRY4 1499 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 KDM5DQ9BY66 1539 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 LRRC37A3O60309 1634 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 SHPRHQ149N8 1683 aa2.06□□□□□ -2.08
USP40-204ENST00000427947 RICTORQ6R327 1708 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 MYO5BQ9ULV0 1848 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 MGAQ8IWI9 3026 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 A0A1B0GV72 72 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 IGSF23A1L1A6 192 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 A8MWP6 167 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 C16orf90A8MZG2 172 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 PIRO00625 290 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 LECT2O14960 151 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 KLRC4O43908 158 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 IGHMP01871 453 aa2.05□□□□□ -2.08
USP40-204ENST00000427947 ZNF705DP0CH99 300 aaPredicted RBP2.05□□□□□ -2.08
USP40-204ENST00000427947 SLC25A16P16260 332 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms