RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 FAM213BQ8TBF2 198 aa12.53□□□□□ -0.4
SHOX2-202ENST00000425436 ST6GALNAC6Q969X2 333 aa12.53□□□□□ -0.4
SHOX2-202ENST00000425436 FLYWCH2Q96CP2 140 aaKnown RBP12.53□□□□□ -0.4
SHOX2-202ENST00000425436 TREM1Q9NP99 234 aa12.53□□□□□ -0.4
SHOX2-202ENST00000425436 HEYLQ9NQ87 328 aaPredicted RBP12.53□□□□□ -0.4
SHOX2-202ENST00000425436 TNFRSF19Q9NS68 423 aa12.53□□□□□ -0.4
SHOX2-202ENST00000425436 A0A1B0GW64 132 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 PMS2P5A8MQ11 134 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 H0YJW9 148 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 MBP02144 154 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 FBP1P09467 338 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 H2AFB1P0C5Y9 115 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 M6PRP20645 277 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 SNCAP37840 140 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 VDAC2P45880 294 aaPredicted RBP12.52□□□□□ -0.4
SHOX2-202ENST00000425436 OR2B8PP59922 312 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 DIAPH2-AS1Q14236 149 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 VWC2Q2TAL6 325 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 HAPLN4Q86UW8 402 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 TGIF2LXQ8IUE1 241 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 VKORC1L1Q8N0U8 176 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 OR5B3Q8NH48 314 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 ZNF418Q8TF45 676 aaPredicted RBP12.52□□□□□ -0.4
SHOX2-202ENST00000425436 TAF15Q92804 592 aaKnown RBP eCLIP12.52□□□□□ -0.4
SHOX2-202ENST00000425436 MALSU1Q96EH3 234 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 MRPL20Q9BYC9 149 aaKnown RBP12.52□□□□□ -0.4
SHOX2-202ENST00000425436 ESM1Q9NQ30 184 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 DPM3Q9P2X0 92 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 TCF19Q9Y242 345 aa12.52□□□□□ -0.4
SHOX2-202ENST00000425436 TBL2Q9Y4P3 447 aaKnown RBP12.52□□□□□ -0.4
SHOX2-202ENST00000425436 AMMECR1Q9Y4X0 333 aaPredicted RBP12.52□□□□□ -0.4
SHOX2-202ENST00000425436 H7C2Y5 167 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 HOXA3O43365 443 aaPredicted RBP12.52□□□□□ -0.41
SHOX2-202ENST00000425436 KBTBD11O94819 623 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 IFNA10P01566 189 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 CD5P06127 495 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 LGALS7P47929 136 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 HOXA1P49639 335 aaPredicted RBP12.52□□□□□ -0.41
SHOX2-202ENST00000425436 MINOS1Q5TGZ0 78 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 Q6YL49 198 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 NABP2Q9BQ15 211 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 WASHC3Q9Y3C0 194 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 FBXO7Q9Y3I1 522 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 OR51B2Q9Y5P1 312 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 MINOS1-NBL1R4GNA1 71 aa12.52□□□□□ -0.41
SHOX2-202ENST00000425436 TRAV1-1A0A0B4J248 108 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 C17orf112F2Z3M2 114 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 LY6LH3BQJ8 138 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 TCF21O43680 179 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 MPDU1O75352 247 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 VENTXO95231 258 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 ZNF709Q8N972 641 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 RBMXL1Q96E39 390 aaKnown RBP12.51□□□□□ -0.41
SHOX2-202ENST00000425436 SEC11CQ9BY50 192 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 MEGF9Q9H1U4 602 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 PRDM13Q9H4Q3 707 aa12.51□□□□□ -0.41
SHOX2-202ENST00000425436 C15orf62A8K5M9 175 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 IGHV4-59P01825 116 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 APOC3P02656 99 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 REG1BP48304 166 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 C10orf91Q5T1B1 145 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 TPTE2P1Q5T6R2 138 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 SVBPQ8N300 66 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 HARBI1Q96MB7 349 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 SSX3Q99909 188 aa12.5□□□□□ -0.41
SHOX2-202ENST00000425436 TRAV3A0A0B4J244 114 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 F8W036 122 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 IGKV1-16P04430 117 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 IER3P46695 156 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 HILS1P60008 231 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 DLK1P80370 383 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 PRCDQ00LT1 54 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 RUNX1Q01196 453 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 ETV3LQ6ZN32 361 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 KRTAP3-3Q9BYR6 98 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 KRTAP3-2Q9BYR7 98 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 PLEKHA3Q9HB20 300 aa12.49□□□□□ -0.41
SHOX2-202ENST00000425436 CARHSP1Q9Y2V2 147 aaKnown RBP12.49□□□□□ -0.41
SHOX2-202ENST00000425436 UBE2L5PA0A1B0GUS4 154 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 DNAJC9-AS1A6NH13 148 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 FNDC10F2Z333 226 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 INS-IGF2F8WCM5 200 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 CD24P25063 80 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 CD1BP29016 333 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 CEACAM3P40198 252 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 FHITP49789 147 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 RPS16P62249 146 aaKnown RBP12.48□□□□□ -0.41
SHOX2-202ENST00000425436 GUK1Q16774 197 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 VMA21Q3ZAQ7 101 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 TMEM41BQ5BJD5 291 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 RPEQ96AT9 228 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 RNF5Q99942 180 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 KIAA1456Q9P272 454 aa12.48□□□□□ -0.41
SHOX2-202ENST00000425436 SRRM4A7MD48 611 aaKnown RBP12.47□□□□□ -0.41
SHOX2-202ENST00000425436 H3BUX3 64 aa12.47□□□□□ -0.41
SHOX2-202ENST00000425436 AGPAT2O15120 278 aa12.47□□□□□ -0.41
SHOX2-202ENST00000425436 SAA1P0DJI8 122 aaPredicted RBP12.47□□□□□ -0.41
SHOX2-202ENST00000425436 MDKP21741 143 aaPredicted RBP12.47□□□□□ -0.41
SHOX2-202ENST00000425436 DEFA5Q01523 94 aa12.47□□□□□ -0.41
SHOX2-202ENST00000425436 SPINK9Q5DT21 86 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms