RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 RTN4RL2Q86UN3 420 aa13.07□□□□□ -0.32
PHRF1-203ENST00000416188 ZIC4Q8N9L1 334 aa13.07□□□□□ -0.32
PHRF1-203ENST00000416188 GRIFINA4D1Z8 144 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 NPIPB6E9PJ23 425 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 NPIPB7O75200 414 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 RELQ04864 619 aaPredicted RBP13.06□□□□□ -0.32
PHRF1-203ENST00000416188 FAM53AQ6NSI3 398 aaPredicted RBP13.06□□□□□ -0.32
PHRF1-203ENST00000416188 ATG101Q9BSB4 218 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 CXorf65A6NEN9 183 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 IGKV1D-33P01593 117 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 IGKV1-33P01594 117 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 AMMECR1LQ6DCA0 310 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 MRPL32Q9BYC8 188 aaKnown RBP13.06□□□□□ -0.32
PHRF1-203ENST00000416188 PTPRQQ9UMZ3 2332 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 TRAV40A0A0B4J280 105 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 B4DSR2 109 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 TRGV3P03979 118 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 CENPWQ5EE01 88 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 OSR1Q8TAX0 266 aaPredicted RBP13.06□□□□□ -0.32
PHRF1-203ENST00000416188 HIST1H2BAQ96A08 127 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 NPCDR1Q9BY65 106 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 KLK15Q9H2R5 256 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 DOCK4Q8N1I0 1966 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 IGKV3-20P01619 116 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 UQCRFS1P47985 274 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 SLC25A15Q9Y619 301 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 NUDT3O95989 172 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 IGHV1-46P01743 117 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 IGHV3-23P01764 117 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 TUBA4BQ9H853 241 aa13.06□□□□□ -0.32
PHRF1-203ENST00000416188 PLXNA4Q9HCM2 1894 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 ZNF207O43670 478 aaKnown RBP13.05□□□□□ -0.32
PHRF1-203ENST00000416188 COTL1Q14019 142 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 SPATA45Q537H7 98 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 OR4A47Q6IF82 309 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 SFRP2Q96HF1 295 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 MAP1LC3AQ9H492 121 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 SIP14410 1827 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 HINT1P49773 126 aaPredicted RBP13.05□□□□□ -0.32
PHRF1-203ENST00000416188 CYP2G1PQ6ZSU1 146 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 FAM90A1Q86YD7 464 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 EEF1AKMT3Q96AZ1 226 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 WBP1Q96G27 269 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 FRMPD3Q5JV73 1810 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 FOXI3A8MTJ6 420 aaPredicted RBP13.05□□□□□ -0.32
PHRF1-203ENST00000416188 TMEM250H0YL14 139 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 TRGC1P0CF51 173 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 IGFBP3P17936 291 aaPredicted RBP13.05□□□□□ -0.32
PHRF1-203ENST00000416188 ATP5IP56385 69 aaPredicted RBP13.05□□□□□ -0.32
PHRF1-203ENST00000416188 ICAM4Q14773 271 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 C19orf54Q5BKX5 351 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 SMIM12Q96EX1 92 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 IFI27L2Q9H2X8 130 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 NOTCH2Q04721 2471 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 RPS20P60866 119 aaKnown RBP13.05□□□□□ -0.32
PHRF1-203ENST00000416188 PRB3Q04118 309 aaPredicted RBP13.05□□□□□ -0.32
PHRF1-203ENST00000416188 COL5A1-AS1Q5SY13 56 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 FAM74A4Q5TZK3 123 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 PRSS22Q9GZN4 317 aa13.05□□□□□ -0.32
PHRF1-203ENST00000416188 KBTBD11-OT1A0A1B0GTJ5 212 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 IGFBP2P18065 325 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 COLCA1Q6ZS62 124 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 H7C2G1 150 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 TFF3Q07654 80 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 LINC00312Q9Y6C7 94 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 PIEZO1Q92508 2521 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 PRR32B1ATL7 298 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 ZNF474Q6S9Z5 364 aaPredicted RBP13.04□□□□□ -0.32
PHRF1-203ENST00000416188 PLSCR2Q9NRY7 297 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 CLPSP04118 112 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 CCL3L1P16619 93 aa13.04□□□□□ -0.32
PHRF1-203ENST00000416188 A8MXK9 166 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 CGAP01215 116 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 NBEAP1P0C6P0 100 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 RAB9AP51151 201 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 HIST1H1AQ02539 215 aaPredicted RBP13.03□□□□□ -0.32
PHRF1-203ENST00000416188 PET117Q6UWS5 81 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 RAX2Q96IS3 184 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 SLC25A16P16260 332 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 ZNF506Q5JVG8 444 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 TCF24Q7RTU0 167 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 PLPPR1Q8TBJ4 325 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 ATRXP46100 2492 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 IGHV3OR16-8A0A075B7F1 116 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 IGHV3-66A0A0C4DH42 116 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 IGKV1-9A0A0C4DH69 117 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 CBLN1P23435 193 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 SMAGPQ0VAQ4 97 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 PMCHL1Q16048 86 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 TDGF1P13385 188 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 DDTP30046 118 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 VDAC2P45880 294 aaPredicted RBP13.03□□□□□ -0.32
PHRF1-203ENST00000416188 FGFBP3Q8TAT2 258 aa13.03□□□□□ -0.32
PHRF1-203ENST00000416188 PQLC2LA1A4F0 135 aa13.02□□□□□ -0.32
PHRF1-203ENST00000416188 Q5PR19 223 aa13.02□□□□□ -0.32
PHRF1-203ENST00000416188 USF3Q68DE3 2245 aa13.02□□□□□ -0.32
PHRF1-203ENST00000416188 TCF21O43680 179 aa13.02□□□□□ -0.33
PHRF1-203ENST00000416188 LYPD3O95274 346 aa13.02□□□□□ -0.33
PHRF1-203ENST00000416188 PRSS2P07478 247 aa13.02□□□□□ -0.33
PHRF1-203ENST00000416188 FOXA3P55318 350 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms