RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SAMD5Q5TGI4 173 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 FAM71F2Q6NXP2 309 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 ZNF826PQ6ZT77 177 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 TUSC5Q8IXB3 177 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 C5orf17Q8NAS9 161 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 FRMD6-AS1P0C7T7 363 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 AZU1P20160 251 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 ANOS1P23352 680 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 GAB4Q2WGN9 574 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 BVES-AS1Q5T3Y7 98 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 SFTA2Q6UW10 78 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 TREML4Q6UXN2 200 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 MTURNQ8N3F0 131 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 VSTM2AQ8TAG5 236 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 GRAMD2BQ96HH9 432 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 NPPCP23582 126 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 KIR3DS1Q14943 382 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 GUSBP1Q15486 140 aa7.8□□□□□ -1.16
COL28A1-201ENST00000399429 INTS1Q8N201 2190 aaKnown RBP7.8□□□□□ -1.16
COL28A1-201ENST00000399429 TRGV10A0A0A0MS01 117 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 APELAP0DMC3 54 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 SLC25A40Q8TBP6 338 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 HS3ST6Q96QI5 342 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 BRWD3Q6RI45 1802 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 IGKV3D-11A0A0A0MRZ8 115 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 IGHV3-21A0A0B4J1V1 117 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 IGKV1-6A0A0C4DH72 117 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 hADV38S2A0JD32 116 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 PPBPP02775 128 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 CLPSP04118 112 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 LINC00205P59089 165 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 SLAQ13239 276 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 SCGB1D4Q6XE38 83 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 HIST1H4GQ99525 98 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 GGTLC1Q9BX51 225 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 A0A1W2PRD5 423 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 A0A1W2PRF3 423 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 A0A1W2PRM7 423 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 LIFP15018 202 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 SRSF9Q13242 221 aaKnown RBP eCLIP7.79□□□□□ -1.16
COL28A1-201ENST00000399429 C20orf204Q6ZNR8 217 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 ZNF414Q96IQ9 312 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 SRXN1Q9BYN0 137 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 TNFRSF19Q9NS68 423 aa7.79□□□□□ -1.16
COL28A1-201ENST00000399429 SPTBN1Q01082 2364 aaKnown RBP7.79□□□□□ -1.16
COL28A1-201ENST00000399429 FRMPD3Q5JV73 1810 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 TRAV8-6A0A0B4J262 113 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 TRAV24A0A0B4J272 114 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 C12orf77C9JDV5 145 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 MMP23AO75900 390 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 CD24P25063 80 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 RAB9AP51151 201 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 SRSF12Q8WXF0 261 aaKnown RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 TMEM54Q969K7 222 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 TSSC4Q9Y5U2 329 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 DOCK10Q96BY6 2186 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 C19orf67A6NJJ6 358 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 ETV2O00321 342 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 MLNRO43193 412 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 LAMTOR5O43504 91 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 HSD52Q0P140 79 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 DPF1Q92782 380 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 LEAP2Q969E1 77 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 LINC00479Q96M42 142 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 CDX2Q99626 313 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 MRPL27Q9P0M9 148 aaKnown RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 COL4A3Q01955 1670 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 A0A0G2JMM0 328 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 A0A1W2PPB8 328 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 KIR3DP1A8MWS1 328 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 VEGFBP49765 207 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 Q1RN00 199 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 PCSK4Q6UW60 755 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 C9JCJ5 164 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 RPL30P62888 115 aaKnown RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 MZT1Q08AG7 82 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 ZNF585BQ52M93 769 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 TIMM23BQ5SRD1 257 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 TMEM144Q7Z5S9 345 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 ZNF418Q8TF45 676 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 LRRC29Q8WV35 223 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 H1FXQ92522 213 aaKnown RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 RND1Q92730 232 aa7.78□□□□□ -1.16
COL28A1-201ENST00000399429 UBE2ZQ9H832 354 aaPredicted RBP7.78□□□□□ -1.16
COL28A1-201ENST00000399429 CNIH1O95406 144 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 IGKV1-39P01597 117 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 IGKV1D-39P04432 117 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 CLDN18P56856 261 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 LYZP61626 148 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 CRIPAKQ8N1N5 446 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 FGFBP3Q8TAT2 258 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 SNRNP40Q96DI7 357 aaKnown RBP7.77□□□□□ -1.17
COL28A1-201ENST00000399429 SFXN3Q9BWM7 321 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 PHF7Q9BWX1 381 aaPredicted RBP7.77□□□□□ -1.17
COL28A1-201ENST00000399429 TOMM40O96008 361 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 FTH1P19P0C7X4 201 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 SRD5A2P31213 254 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 HSPE1P61604 102 aaKnown RBP7.77□□□□□ -1.17
COL28A1-201ENST00000399429 GNG5P63218 68 aa7.77□□□□□ -1.17
COL28A1-201ENST00000399429 PSG3Q16557 428 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms