RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 LOC390937A0A1W2PQ73 354 aa11.87□□□□□ -0.51
COL4A3-202ENST00000396578 HOXA3O43365 443 aaPredicted RBP11.87□□□□□ -0.51
COL4A3-202ENST00000396578 RIPPLY3P57055 190 aa11.87□□□□□ -0.51
COL4A3-202ENST00000396578 ZNF585BQ52M93 769 aa11.87□□□□□ -0.51
COL4A3-202ENST00000396578 TFF3Q07654 80 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 A8MXK9 166 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 NKX2-8O15522 239 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 CELA2AP08217 269 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 SRP19P09132 144 aaKnown RBP11.86□□□□□ -0.51
COL4A3-202ENST00000396578 ZNHIT1O43257 154 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 SLC25A2Q9BXI2 301 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 TUBA4BQ9H853 241 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 IGHV3-66A0A0C4DH42 116 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 SAA1P0DJI8 122 aaPredicted RBP11.86□□□□□ -0.51
COL4A3-202ENST00000396578 YAE1D1Q9NRH1 226 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 NHP2Q9NX24 153 aaKnown RBP11.86□□□□□ -0.51
COL4A3-202ENST00000396578 CCL19Q99731 98 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 SLC25A15Q9Y619 301 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 IGFBP2P18065 325 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 OR5P3Q8WZ94 311 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 WBP1LQ9NX94 342 aa11.86□□□□□ -0.51
COL4A3-202ENST00000396578 FOXA2Q9Y261 457 aaPredicted RBP11.86□□□□□ -0.51
COL4A3-202ENST00000396578 IGHV1-69-2A0A0G2JMI3 117 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 LOC105371267A0A1B0GV96 52 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 PNKDQ8N490 385 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 TM4SF5O14894 197 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 RPL39P5Q59GN2 51 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 OR52E5Q8NH55 327 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 NRN1Q9NPD7 142 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 TMEM14DPA8MWL7 114 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 DPM2O94777 84 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 Q9H3A6 140 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 IGHV3-35A0A0C4DH35 117 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 FAM181AQ8N9Y4 354 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 IFI27L2Q9H2X8 130 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 IGHV3-23P01764 117 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 IFI6P09912 130 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 PLNP26678 52 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 IFI27P40305 119 aaPredicted RBP11.85□□□□□ -0.51
COL4A3-202ENST00000396578 PIN1P1O15428 100 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 GDF15Q99988 308 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 SERF1AO75920 110 aa11.85□□□□□ -0.51
COL4A3-202ENST00000396578 WNK2Q9Y3S1 2297 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 UBR3Q6ZT12 1888 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 MUC21A0A0G2JKD1 596 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 MUC21A0A140T8X8 626 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 MUC21Q5SSG8 566 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 A0A0G2JLM5 398 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 ADMP35318 185 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.84□□□□□ -0.51
COL4A3-202ENST00000396578 COL18A1P39060 1754 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 OSR1Q8TAX0 266 aaPredicted RBP11.84□□□□□ -0.51
COL4A3-202ENST00000396578 FOXH1O75593 365 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 NDUFAF3Q9BU61 184 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 DOCK8Q8NF50 2099 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 TMPRSS3P57727 454 aa11.84□□□□□ -0.51
COL4A3-202ENST00000396578 SRSF4Q08170 494 aaKnown RBP11.84□□□□□ -0.51
COL4A3-202ENST00000396578 PDLIM4P50479 330 aa11.83□□□□□ -0.51
COL4A3-202ENST00000396578 ITLN2Q8WWU7 325 aaPredicted RBP11.83□□□□□ -0.51
COL4A3-202ENST00000396578 TMEM54Q969K7 222 aa11.83□□□□□ -0.51
COL4A3-202ENST00000396578 IGKV3D-20A0A0C4DH25 116 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 NPIPB13A6NJU9 1138 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 ZFAND6Q6FIF0 208 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 SRXN1Q9BYN0 137 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 SRSF1Q07955 248 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL4A3-202ENST00000396578 ZDBF2Q9HCK1 2354 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 RAMP1O60894 148 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 TMEM42Q69YG0 159 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 SFTA2Q6UW10 78 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 VKORC1Q9BQB6 163 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 FAM71F2Q6NXP2 309 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 TMEM170AQ8WVE7 144 aa11.83□□□□□ -0.52
COL4A3-202ENST00000396578 IGHV3-49A0A0A0MS15 119 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 GGTLC3B5MD39 225 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 ATP5G3P48201 142 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 CACNG8Q8WXS5 425 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 IL9P15248 144 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 ATP5J2P56134 94 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 LDLRAD2Q5SZI1 272 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 TM2D1Q9BX74 207 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 RNASE7Q9H1E1 156 aaKnown RBP11.82□□□□□ -0.52
COL4A3-202ENST00000396578 PILRAQ9UKJ1 303 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 SHANK3Q9BYB0 1731 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 IGHV3OR16-13A0A075B7E8 117 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 IGHV3-74A0A0B4J1X5 117 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 ACP7Q6ZNF0 438 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 SLC22A18ASQ8N1D0 253 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 ZNRF1Q8ND25 227 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 ST20Q9HBF5 79 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 A8MWV9 139 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 ZP1P60852 638 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.82□□□□□ -0.52
COL4A3-202ENST00000396578 LCTP09848 1927 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 TRAV9-2A0A087WT02 112 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 SPAARA0A1B0GVQ0 90 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 LOC285556D6RIA3 1793 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 LINC01587Q99440 93 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 B9A039 149 aa11.82□□□□□ -0.52
COL4A3-202ENST00000396578 HBDP02042 147 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 ZNF688P0C7X2 276 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms