RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 TEX38Q6PEX7 206 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 BIVMQ86UB2 503 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 RPP21Q9H633 154 aaKnown RBP7.57□□□□□ -1.2
SYNE1-209ENST00000367257 OSTCQ9NRP0 149 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 LOC389332A0A1B0GUA5 103 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 SPINT1O43278 529 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 CRYBB3P26998 211 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 BTCP35070 178 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 PVRIGQ6DKI7 326 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 DRAM1Q8N682 238 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 ITLN1Q8WWA0 313 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 NEU4Q8WWR8 484 aaPredicted RBP7.57□□□□□ -1.2
SYNE1-209ENST00000367257 CHCHD1Q96BP2 118 aaKnown RBP7.57□□□□□ -1.2
SYNE1-209ENST00000367257 CCL13Q99616 98 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 OTORQ9NRC9 128 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 RNF115Q9Y4L5 304 aa7.57□□□□□ -1.2
SYNE1-209ENST00000367257 EYSQ5T1H1 3165 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 IGKV1D-42A0A075B6H8 117 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 A0A1B0GTI1 187 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 RBMY1BA6NDE4 496 aaKnown RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 RBMY1EA6NEQ0 496 aaKnown RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 NPFFO15130 113 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 AGFG2O95081 481 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 RBMY1DP0C7P1 496 aaKnown RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 RBMY1A1P0DJD3 496 aaKnown RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 RBMY1CP0DJD4 496 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 GLRXP35754 106 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 FAM159AQ6UWV7 190 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 C16orf47Q6ZP98 133 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 ASCL2Q99929 193 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 SNAI2O43623 268 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 GAGE5Q13069 117 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 GAGE6Q13070 117 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 ASPHD2Q6ICH7 369 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 ZNF818PQ6ZRF7 136 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 ZFC3H1O60293 1989 aaKnown RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 PEX7O00628 323 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 ZG16O60844 167 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 GPX1P07203 203 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 CCL4P13236 92 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 PDLIM4P50479 330 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 SOSTQ9BQB4 213 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 MS4A6AQ9H2W1 248 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 R4GN57 208 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 ARID1AO14497 2285 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 IGKV3-11P04433 115 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 TMPRSS3P57727 454 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 Q6ZT83 130 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 FAM57AQ8TBR7 257 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 GDF15Q99988 308 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 ZNF703Q9H7S9 590 aaPredicted RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 FSCN3Q9NQT6 498 aa7.56□□□□□ -1.2
SYNE1-209ENST00000367257 PDCD11Q14690 1871 aaKnown RBP7.56□□□□□ -1.2
SYNE1-209ENST00000367257 TMSB15BA0A087X1C1 80 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 H7C2G1 150 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 MYF5P13349 255 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 FCGR2BP31994 310 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 SSBP2P81877 361 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 C3AR1Q16581 482 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 MEIG1Q5JSS6 88 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 ABHD12Q8N2K0 398 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 SMIM20Q8N5G0 67 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 NXT2Q9NPJ8 142 aaKnown RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 POLR3KQ9Y2Y1 108 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 LAMA3Q16787 3333 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 A0A1W2PRE2 83 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 PGPEP1LA6NFU8 196 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 CCL1P22362 96 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 CMC4P56277 68 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 CCL20P78556 96 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 ORMDL3Q8N138 153 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 KLF14Q8TD94 323 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 C1QTNF5Q9BXJ0 243 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 XIRP2A4UGR9 3374 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 TRBV20OR9-2A0A075B6H5 130 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 IGHV3OR15-7A0A075B7D8 119 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 NR2C2APQ86WQ0 139 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 RNASE8Q8TDE3 154 aaKnown RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 KLHDC3Q9BQ90 382 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 TSSC4Q9Y5U2 329 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 TRAV8-4A0A0B4J246 113 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 IGFBP3P17936 291 aaPredicted RBP7.55□□□□□ -1.2
SYNE1-209ENST00000367257 GFRA1P56159 465 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 LINC00114Q6XXX2 140 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 FGF11Q92914 225 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 LY96Q9Y6Y9 160 aa7.55□□□□□ -1.2
SYNE1-209ENST00000367257 MSGN1A6NI15 193 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 NBEAP1P0C6P0 100 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 COX6A1P12074 109 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 ADMP35318 185 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 ZNF562Q6V9R5 426 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 GNB1LQ9BYB4 327 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 TMEM74BQ9NUR3 256 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 TRAV1-1A0A0B4J248 108 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 TRAV5A0A0B4J249 113 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 CCL21O00585 134 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 ADCYAP1P18509 176 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 CD300EQ496F6 205 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-209ENST00000367257 MPV17L2Q567V2 206 aa7.54□□□□□ -1.2
SYNE1-209ENST00000367257 RPP25Q9BUL9 199 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms