RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 COMMD7Q86VX2 200 aa0.08□□□□□ -2.4
RNU4-28P-201ENST00000364739 OOSP2Q86WS3 158 aa0.08□□□□□ -2.4
RNU4-28P-201ENST00000364739 KCTD7Q96MP8 289 aa0.08□□□□□ -2.4
RNU4-28P-201ENST00000364739 C15orf41Q9Y2V0 281 aa0.08□□□□□ -2.4
RNU4-28P-201ENST00000364739 ALPK3Q96L96 1907 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 TRAV1-1A0A0B4J248 108 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 DISC1C4P0D8 188 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 OR1I1O60431 355 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 KCNE1P15382 129 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 CST9Q5W186 159 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 OR2T4Q8NH00 348 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 HDHD2Q9H0R4 259 aa0.07□□□□□ -2.4
RNU4-28P-201ENST00000364739 TRBV6-8A0A0A6YYG3 113 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 FABP12A6NFH5 140 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 PRM2P04554 102 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 CD151P48509 253 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 KCNJ8Q15842 424 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 PDPK2PQ6A1A2 396 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 TNFAIP8L2Q6P589 184 aaPredicted RBP0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 ROPN1LQ96C74 230 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 DIRAS2Q96HU8 199 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 CKLFQ9UBR5 152 aa0.06□□□□□ -2.4
RNU4-28P-201ENST00000364739 A0A0J9YY10 115 aa0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 A0A1B0GX78 115 aa0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 TYMSP04818 313 aa0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 RAB4BP61018 213 aa0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 PDE6HQ13956 83 aa0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 IBA57Q5T440 356 aaKnown RBP0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 OR4D11Q8NGI4 311 aa0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 C7orf50Q9BRJ6 194 aaKnown RBP0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 SPANXB1Q9NS25 103 aaPredicted RBP0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 ASCC3Q8N3C0 2202 aaKnown RBP0.05□□□□□ -2.4
RNU4-28P-201ENST00000364739 ERICH2A1L162 156 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 NCR3O14931 201 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 HTR1AP08908 422 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 ZNF25P17030 456 aaPredicted RBP0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 CNBPP62633 177 aaKnown RBP0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 SRSF6Q13247 344 aaKnown RBP0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 AADACL3Q5VUY0 350 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 BPIFA4PQ86YQ2 179 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 RASSF5Q8WWW0 418 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 OR51I2Q9H344 312 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 MAP1LC3AQ9H492 121 aa0.04□□□□□ -2.4
RNU4-28P-201ENST00000364739 COL1A1P02452 1464 aaPredicted RBP0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 ADGRB2O60241 1585 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 TRBV20OR9-2A0A075B6H5 130 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 M0R2N4 97 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 ACOX3O15254 700 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 SSR2P43308 183 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 MGAT3Q09327 533 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 STX5Q13190 355 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 GUK1Q16774 197 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 COQ5Q5HYK3 327 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 GLT8D1Q68CQ7 371 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 DERL1Q9BUN8 251 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 TMEM147Q9BVK8 224 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 UPF3BQ9BZI7 483 aaKnown RBP0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 RAD50Q92878 1312 aa0.03□□□□□ -2.4
RNU4-28P-201ENST00000364739 EVPLLA8MZ36 301 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 PSMB6P28072 239 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 CCL20P78556 96 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 RNASE10Q5GAN6 216 aaKnown RBP0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 C1orf195Q5TG92 126 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 PHF13Q86YI8 300 aaPredicted RBP0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 CLVS1Q8IUQ0 354 aaPredicted RBP0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 DEFB125Q8N687 156 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 PFN4Q8NHR9 129 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 KLK6Q92876 244 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 BORCS5Q969J3 196 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 CNBD2Q96M20 576 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 TMEM70Q9BUB7 260 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 ACER3Q9NUN7 267 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 TP73-AS1Q9UF72 201 aa0.02□□□□□ -2.41
RNU4-28P-201ENST00000364739 DOCK5Q9H7D0 1870 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 A0A1W2PPM0 123 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 HSBP1L1C9JCN9 74 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 INMT-MINDY4F8WBC2 141 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 KRTAP2-3P0C7H8 128 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 RPL12P30050 165 aaKnown RBP0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 UBE2G2P60604 165 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 CAV1Q03135 178 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 Q8N402 240 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 SCGB3A1Q96QR1 104 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 GINS4Q9BRT9 223 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 KRTAP2-4Q9BYR9 128 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 KRTAP2-1Q9BYU5 128 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 FAM96AQ9H5X1 160 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 CDC42SE1Q9NRR8 79 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 TOPBP1Q92547 1522 aa0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 ZNF106Q9H2Y7 1883 aaKnown RBP0.01□□□□□ -2.41
RNU4-28P-201ENST00000364739 ANKRD17O75179 2603 aaKnown RBP0□□□□□ -2.41
RNU4-28P-201ENST00000364739 CLDN25C9JDP6 229 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 INE1O15225 51 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 IGKV1-5P01602 117 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 EFNA4P52798 201 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 GRK1Q15835 563 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 SPRNQ5BIV9 151 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 DEFB128Q7Z7B8 93 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 GPR32P1Q8NGA4 272 aa0□□□□□ -2.41
RNU4-28P-201ENST00000364739 OR4E2Q8NGC2 313 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms