RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HBBP68871 147 aa6.12□□□□□ -1.43
VPS13A-202ENST00000357409 SSBP2P81877 361 aaPredicted RBP6.12□□□□□ -1.43
VPS13A-202ENST00000357409 ZNF876PQ49A33 203 aa6.12□□□□□ -1.43
VPS13A-202ENST00000357409 CFAP161Q6P656 301 aa6.12□□□□□ -1.43
VPS13A-202ENST00000357409 Q9HAA7 133 aa6.12□□□□□ -1.43
VPS13A-202ENST00000357409 HBDP02042 147 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 ASIPP42127 132 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 CIARTQ8N365 385 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-202ENST00000357409 SMCHD1A6NHR9 2005 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 GAGE10A6NGK3 116 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 AGAP20933 346 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 CIRBPQ14011 172 aaKnown RBP6.11□□□□□ -1.43
VPS13A-202ENST00000357409 TMEM42Q69YG0 159 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 FAM166AQ6J272 317 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 ZIC4Q8N9L1 334 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 SSC4DQ8WTU2 575 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 PARD6GQ9BYG4 376 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-202ENST00000357409 Q9H3A6 140 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 A0A087WX48 190 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 DEFB131AP59861 70 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 LHBP01229 141 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 TRGC1P0CF51 173 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 LINC01590Q5TEZ4 76 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 KIF13AQ9H1H9 1805 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 A0A087WWL8 130 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 PMS2P5A8MQ11 134 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 SMKR1H3BMG3 65 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 CTDSPLO15194 276 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 OR52E5Q8NH55 327 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 OR9G9P0C7N8 305 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 EIF4EBP2Q13542 120 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-202ENST00000357409 CD300EQ496F6 205 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-202ENST00000357409 OR11H4Q8NGC9 324 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 Q8TAT8 98 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 VSIRQ9H7M9 311 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 SAA2-SAA4A0A096LPE2 208 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 TRAV13-1A0A0B4J241 112 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 SAA2P0DJI9 122 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-202ENST00000357409 PSG9Q00887 426 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 ZBTB34Q8NCN2 500 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 ZNF48Q96MX3 618 aaPredicted RBP6.11□□□□□ -1.43
VPS13A-202ENST00000357409 RCHY1Q96PM5 261 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 RPRMQ9NS64 109 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 PAPPA2Q9BXP8 1791 aa6.11□□□□□ -1.43
VPS13A-202ENST00000357409 DNAL4O96015 105 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 PLP1P60201 277 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 VKORC1Q9BQB6 163 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 CDK5RAP2Q96SN8 1893 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 FAM74A7A6NL05 159 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 COX6CP09669 75 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 GCHFRP30047 84 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 H2BFSP57053 126 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 TMEM187Q14656 261 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 FAM74A3Q4VXF1 159 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 H0Y980 276 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 SPATA31B1PQ5VZV4 182 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 DSPPQ9NZW4 1301 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 COL4A6Q14031 1691 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 CCL1P22362 96 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 HOXC8P31273 242 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 PAX9P55771 341 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 TMEM136Q6ZRR5 245 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 SETD1AO15047 1707 aaKnown RBP6.1□□□□□ -1.43
VPS13A-202ENST00000357409 ZNF138P52744 262 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 HGFACQ04756 655 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 PAX8Q06710 450 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 ATP6V0BQ99437 205 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 CFHR5Q9BXR6 569 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 TNFSF18Q9UNG2 199 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 GRNP28799 593 aaKnown RBP6.1□□□□□ -1.43
VPS13A-202ENST00000357409 MRPL14Q6P1L8 145 aaKnown RBP6.1□□□□□ -1.43
VPS13A-202ENST00000357409 CD300LDQ6UXZ3 194 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 BMPERQ8N8U9 685 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 PRDM13Q9H4Q3 707 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 ZNF257Q9Y2Q1 563 aa6.1□□□□□ -1.43
VPS13A-202ENST00000357409 AHDC1Q5TGY3 1603 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-202ENST00000357409 HLA-DRB1P01911 266 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 FOXL1Q12952 345 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 C9orf62Q8N4C0 152 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 IFI27L2Q9H2X8 130 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 DEFB105AQ8NG35 78 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 SLC25A38Q96DW6 304 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 PRELID3AQ96N28 172 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 SEPSECSQ9HD40 501 aaKnown RBP6.09□□□□□ -1.43
VPS13A-202ENST00000357409 KLK9Q9UKQ9 250 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 F5H768 121 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 WNT2P09544 360 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 PTGDSP41222 190 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 COQ2Q96H96 371 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 TMEM70Q9BUB7 260 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 K7ERU9 68 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 EFNA2O43921 213 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 ZP3P21754 424 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 MORN2Q502X0 79 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 NRIP2Q9BQI9 281 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 TRAV30A0A087WSZ9 112 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 HOXD4P09016 255 aaPredicted RBP6.09□□□□□ -1.43
VPS13A-202ENST00000357409 RNASE13Q5GAN3 156 aaKnown RBP6.09□□□□□ -1.43
VPS13A-202ENST00000357409 C1QL4Q86Z23 238 aa6.09□□□□□ -1.43
VPS13A-202ENST00000357409 PUSL1Q8N0Z8 303 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms