RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RAB9AP51151 201 aa17.3■□□□□ 0.36
SDC3-202ENST00000339394 HIST2H2BDQ6DRA6 164 aa17.3■□□□□ 0.36
SDC3-202ENST00000339394 RNF152Q8N8N0 203 aa17.3■□□□□ 0.36
SDC3-202ENST00000339394 DTD1Q8TEA8 209 aa17.3■□□□□ 0.36
SDC3-202ENST00000339394 CXCL3P19876 107 aa17.29■□□□□ 0.36
SDC3-202ENST00000339394 FCN2Q15485 313 aa17.29■□□□□ 0.36
SDC3-202ENST00000339394 KRTAP21-3Q3LHN1 58 aa17.29■□□□□ 0.36
SDC3-202ENST00000339394 C11orf87Q6NUJ2 197 aa17.29■□□□□ 0.36
SDC3-202ENST00000339394 TMEM65Q6PI78 240 aa17.29■□□□□ 0.36
SDC3-202ENST00000339394 C12orf54Q6X4T0 127 aa17.29■□□□□ 0.36
SDC3-202ENST00000339394 HEYLQ9NQ87 328 aaPredicted RBP17.29■□□□□ 0.36
SDC3-202ENST00000339394 TET2Q6N021 2002 aaPredicted RBP17.28■□□□□ 0.36
SDC3-202ENST00000339394 H3BUA1 57 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 SYNGR2O43760 224 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 BRI3O95415 125 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 SCGB1D2O95969 90 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 RPLP1P05386 114 aaKnown RBP17.28■□□□□ 0.36
SDC3-202ENST00000339394 POLR2GP62487 172 aaKnown RBP eCLIP17.28■□□□□ 0.36
SDC3-202ENST00000339394 CD83Q01151 205 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 IL15RAQ13261 267 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 Q6ZNX1 250 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 P2RX4Q99571 388 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 HIPK2Q9H2X6 1198 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 SLA2Q9H6Q3 261 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 F11RQ9Y624 299 aaKnown RBP17.28■□□□□ 0.36
SDC3-202ENST00000339394 MED6O75586 246 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 MBPP02686 304 aaPredicted RBP17.28■□□□□ 0.36
SDC3-202ENST00000339394 SNCAP37840 140 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 RRAS2P62070 204 aaPredicted RBP17.28■□□□□ 0.36
SDC3-202ENST00000339394 FANCD2OSQ96PS1 177 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 DMRT1Q9Y5R6 373 aa17.28■□□□□ 0.36
SDC3-202ENST00000339394 TRGV3P03979 118 aa17.27■□□□□ 0.35
SDC3-202ENST00000339394 C3orf56Q8N813 242 aa17.27■□□□□ 0.35
SDC3-202ENST00000339394 ZNF114Q8NC26 417 aa17.27■□□□□ 0.35
SDC3-202ENST00000339394 OR11H7Q8NGC8 314 aa17.27■□□□□ 0.35
SDC3-202ENST00000339394 OR1P1Q8NH06 330 aa17.27■□□□□ 0.35
SDC3-202ENST00000339394 CITED1Q99966 193 aa17.27■□□□□ 0.35
SDC3-202ENST00000339394 CITED2Q99967 270 aaPredicted RBP17.27■□□□□ 0.35
SDC3-202ENST00000339394 NMES1Q9C002 83 aa17.27■□□□□ 0.35
SDC3-202ENST00000339394 TRBV9A0A0B4J1U6 114 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 IAPPP10997 89 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 MFAP2P55001 183 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 TPPP2P59282 170 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 KIAA0141Q14154 515 aaPredicted RBP17.26■□□□□ 0.35
SDC3-202ENST00000339394 KLK9Q2XQG4 91 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 BSXQ3C1V8 233 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 MYOZ3Q8TDC0 251 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 WDR89Q96FK6 387 aaPredicted RBP17.26■□□□□ 0.35
SDC3-202ENST00000339394 ZNF747Q9BV97 191 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 KLK9Q9UKQ9 250 aa17.26■□□□□ 0.35
SDC3-202ENST00000339394 IGLV11-55A0A075B6I3 123 aa17.25■□□□□ 0.35
SDC3-202ENST00000339394 TCRBV4S1A1TA0A5B7 111 aa17.25■□□□□ 0.35
SDC3-202ENST00000339394 WRBO00258 174 aa17.25■□□□□ 0.35
SDC3-202ENST00000339394 HTR2BP41595 481 aa17.25■□□□□ 0.35
SDC3-202ENST00000339394 CYCSP99999 105 aaKnown RBP17.25■□□□□ 0.35
SDC3-202ENST00000339394 DEFA5Q01523 94 aa17.25■□□□□ 0.35
SDC3-202ENST00000339394 SLC25A24Q6NUK1 477 aa17.25■□□□□ 0.35
SDC3-202ENST00000339394 SSSCA1O60232 199 aa17.24■□□□□ 0.35
SDC3-202ENST00000339394 OR2J3O76001 311 aa17.24■□□□□ 0.35
SDC3-202ENST00000339394 RNASE2P10153 161 aaKnown RBP17.24■□□□□ 0.35
SDC3-202ENST00000339394 RHOGP84095 191 aa17.24■□□□□ 0.35
SDC3-202ENST00000339394 OR1L6Q8NGR2 347 aa17.24■□□□□ 0.35
SDC3-202ENST00000339394 CIB3Q96Q77 187 aaPredicted RBP17.24■□□□□ 0.35
SDC3-202ENST00000339394 RCL1Q9Y2P8 373 aaKnown RBP17.24■□□□□ 0.35
SDC3-202ENST00000339394 U3KQ87 197 aa17.24■□□□□ 0.35
SDC3-202ENST00000339394 HIST1H1BP16401 226 aaKnown RBP17.23■□□□□ 0.35
SDC3-202ENST00000339394 SUB1P53999 127 aaKnown RBP eCLIP17.23■□□□□ 0.35
SDC3-202ENST00000339394 RAB32Q13637 225 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 KHDC1LQ5JSQ8 128 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 ZNF491Q8N8L2 437 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 NECAP1Q8NC96 275 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 SLC24A4Q8NFF2 622 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 ZFP57Q9NU63 452 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 STAB1Q9NY15 2570 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 K7EPK0 472 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 CYB5BO43169 146 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 TMEM50AO95807 157 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 IFNA10P01566 189 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 TMEM170AQ8WVE7 144 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 UBE2E2Q96LR5 201 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 FBXL7Q9UJT9 491 aa17.23■□□□□ 0.35
SDC3-202ENST00000339394 LSM5Q9Y4Y9 91 aaKnown RBP17.23■□□□□ 0.35
SDC3-202ENST00000339394 TSSC4Q9Y5U2 329 aaPredicted RBP17.23■□□□□ 0.35
SDC3-202ENST00000339394 NDUFB8O95169 186 aa17.22■□□□□ 0.35
SDC3-202ENST00000339394 CDX1P47902 265 aaPredicted RBP17.22■□□□□ 0.35
SDC3-202ENST00000339394 S100A10P60903 97 aa17.22■□□□□ 0.35
SDC3-202ENST00000339394 C15orf32Q32M92 178 aa17.22■□□□□ 0.35
SDC3-202ENST00000339394 USMG5Q96IX5 58 aa17.22■□□□□ 0.35
SDC3-202ENST00000339394 THYN1Q9P016 225 aa17.22■□□□□ 0.35
SDC3-202ENST00000339394 A0A0G2JLM5 398 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 FAM223BA6NKX1 122 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 LY86O95711 162 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 NPY1RP25929 384 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 PAX9P55771 341 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 RPL23AP62750 156 aaKnown RBP17.21■□□□□ 0.35
SDC3-202ENST00000339394 LRRC37A5PQ49AS3 106 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 C2orf83Q53S99 150 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 PVRIGQ6DKI7 326 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 FAM223AQ8IWN6 122 aa17.21■□□□□ 0.35
SDC3-202ENST00000339394 PPP1R1CQ8WVI7 109 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms