RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 PAX6P26367 422 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 CHRNA7P36544 502 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 ACOT6Q3I5F7 207 aaPredicted RBP13.6□□□□□ -0.23
DDX41-201ENST00000330503 TEPPQ6URK8 271 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 CLRN3Q8NCR9 226 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 SIRPDQ9H106 197 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 PLXNB1O43157 2135 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 PMS2P11Q13670 270 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 KHDC3LQ587J8 217 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 MMD2Q8IY49 270 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 CFHR4Q92496 578 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 RAB24Q969Q5 203 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 RNF5Q99942 180 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 TMPRSS5Q9H3S3 457 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 PXMP4Q9Y6I8 212 aa13.6□□□□□ -0.23
DDX41-201ENST00000330503 IGHV2-70DA0A0C4DH43 119 aa13.59□□□□□ -0.23
DDX41-201ENST00000330503 CYB5BO43169 146 aa13.59□□□□□ -0.23
DDX41-201ENST00000330503 VENTXO95231 258 aa13.59□□□□□ -0.23
DDX41-201ENST00000330503 HSPB1P04792 205 aaKnown RBP13.59□□□□□ -0.23
DDX41-201ENST00000330503 HOXB4P17483 251 aaPredicted RBP13.59□□□□□ -0.23
DDX41-201ENST00000330503 PDLIM4P50479 330 aa13.59□□□□□ -0.23
DDX41-201ENST00000330503 METTL1Q9UBP6 276 aaKnown RBP13.59□□□□□ -0.23
DDX41-201ENST00000330503 SEC14L6B5MCN3 397 aa13.58□□□□□ -0.23
DDX41-201ENST00000330503 SRSF1Q07955 248 aaKnown RBP eCLIP13.58□□□□□ -0.232e-6■□□□□ 8.3
DDX41-201ENST00000330503 GAMTQ14353 236 aa13.58□□□□□ -0.23
DDX41-201ENST00000330503 HABP2Q14520 560 aaPredicted RBP13.58□□□□□ -0.23
DDX41-201ENST00000330503 SSMEM1Q8WWF3 244 aa13.58□□□□□ -0.23
DDX41-201ENST00000330503 P2RX4Q99571 388 aa13.58□□□□□ -0.23
DDX41-201ENST00000330503 CCL19Q99731 98 aa13.58□□□□□ -0.23
DDX41-201ENST00000330503 ZFP92A6NM28 416 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 FCN1O00602 326 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 SOX15O60248 233 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 BCL2P10415 239 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 CEACAM3P40198 252 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 CD69Q07108 199 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 DYNAPQ8N1N2 210 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 FBXL15Q9H469 300 aa13.58□□□□□ -0.24
DDX41-201ENST00000330503 MED13LQ71F56 2210 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 ZNF462Q96JM2 2506 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 IGKV1OR2-108A0A075B7D4 117 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 IGLC7A0M8Q6 106 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 SSBP2P81877 361 aaPredicted RBP13.57□□□□□ -0.24
DDX41-201ENST00000330503 FBLN7Q53RD9 439 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 SOHLH1Q5JUK2 328 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 TMEM144Q7Z5S9 345 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 PPP1R27Q86WC6 154 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 COL12A1Q99715 3063 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 LINC00869P0C866 280 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 MAS1LP35410 378 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 GPX4P36969 197 aaPredicted RBP13.57□□□□□ -0.24
DDX41-201ENST00000330503 RPL27AP46776 148 aaKnown RBP13.57□□□□□ -0.24
DDX41-201ENST00000330503 RPL29P47914 159 aaKnown RBP13.57□□□□□ -0.24
DDX41-201ENST00000330503 COMPP49747 757 aaPredicted RBP13.57□□□□□ -0.24
DDX41-201ENST00000330503 TNXAQ16473 311 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 TMEM88Q6PEY1 159 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 CYB561D1Q8N8Q1 229 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 C17orf50Q8WW18 174 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 SLC45A2Q9UMX9 530 aa13.57□□□□□ -0.24
DDX41-201ENST00000330503 REG1AP05451 166 aa13.56□□□□□ -0.24
DDX41-201ENST00000330503 CDC34P49427 236 aaPredicted RBP13.56□□□□□ -0.24
DDX41-201ENST00000330503 OR2T6Q8NHC8 308 aa13.56□□□□□ -0.24
DDX41-201ENST00000330503 TBX15Q96SF7 602 aa13.56□□□□□ -0.24
DDX41-201ENST00000330503 MYO18BQ8IUG5 2567 aa13.56□□□□□ -0.24
DDX41-201ENST00000330503 CD24P25063 80 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 PRR20EP86478 221 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 PRR20CP86479 221 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 PRR20DP86480 221 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 PRR20BP86481 221 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 PRR20AP86496 221 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 RAB31Q13636 194 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 PVRIGQ6DKI7 326 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 CBLN2Q8IUK8 224 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 STPG3Q8N7X2 389 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 GATAD1Q8WUU5 269 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 CACNG8Q8WXS5 425 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 FNDC4Q9H6D8 234 aaPredicted RBP13.55□□□□□ -0.24
DDX41-201ENST00000330503 TOX4O94842 621 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 B2MP61769 119 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 SSX2Q16385 188 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 RNASEH2CQ8TDP1 164 aaKnown RBP13.55□□□□□ -0.24
DDX41-201ENST00000330503 VAX2Q9UIW0 290 aa13.55□□□□□ -0.24
DDX41-201ENST00000330503 NAV3Q8IVL0 2385 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 TEX22C9J3V5 150 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 AREGP15514 252 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 SUB1P53999 127 aaKnown RBP eCLIP13.54□□□□□ -0.24
DDX41-201ENST00000330503 MFAP2P55001 183 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 GNB1P62873 340 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 MINOS1Q5TGZ0 78 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 SLC16A13Q7RTY0 426 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 AJUBAQ96IF1 538 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 EAF1Q96JC9 268 aaPredicted RBP13.54□□□□□ -0.24
DDX41-201ENST00000330503 MINOS1-NBL1R4GNA1 71 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 ASH1LQ9NR48 2969 aaKnown RBP13.54□□□□□ -0.24
DDX41-201ENST00000330503 FOXH1O75593 365 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 ACTL6BO94805 426 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 MOSP00540 346 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 CEBPGP53567 150 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 TMEM249Q2WGJ8 235 aa13.54□□□□□ -0.24
DDX41-201ENST00000330503 RBMS3Q6XE24 437 aaKnown RBP13.54□□□□□ -0.24
DDX41-201ENST00000330503 C19orf35Q6ZS72 473 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms