RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 LOC400499M0QZD8 3231 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 IGLV2-8P01709 118 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 HLA-DQA1P01909 254 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 FKBP2P26885 142 aaKnown RBP11.13□□□□□ -0.63
SKA3-201ENST00000298260 RHOBP62745 196 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 GABRA6Q16445 453 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 TBR1Q16650 682 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 TIGITQ495A1 244 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 PNKDQ8N490 385 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 HSD17B10Q99714 261 aaKnown RBP11.13□□□□□ -0.63
SKA3-201ENST00000298260 SF3B5Q9BWJ5 86 aaKnown RBP11.13□□□□□ -0.63
SKA3-201ENST00000298260 HINT2Q9BX68 163 aa11.13□□□□□ -0.63
SKA3-201ENST00000298260 FNDC4Q9H6D8 234 aaPredicted RBP11.13□□□□□ -0.63
SKA3-201ENST00000298260 PIGBOS1A0A0B4J2F0 54 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 C9JCJ5 164 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 OR7C2O60412 319 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 PRAMEF5Q5TYX0 476 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 PRAMEF6Q5VXH4 476 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 TRAT1Q6PIZ9 186 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 SCCPDHQ8NBX0 429 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 GALMQ96C23 342 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 WDR54Q9H977 334 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 MRPL33O75394 65 aaKnown RBP11.12□□□□□ -0.63
SKA3-201ENST00000298260 LINC00869P0C866 280 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 CXCL12P48061 93 aa11.12□□□□□ -0.63
SKA3-201ENST00000298260 MRPS17Q9Y2R5 130 aaKnown RBP11.12□□□□□ -0.63
SKA3-201ENST00000298260 PPIAL4DF5H284 164 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 MT-CO3P00414 261 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 CD27P26842 260 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 CATR1Q13166 79 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 EIF4EBP1Q13541 118 aaPredicted RBP11.11□□□□□ -0.63
SKA3-201ENST00000298260 TUSC5Q8IXB3 177 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 CORO2AQ92828 525 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 OCIAD1Q9NX40 245 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 VWC2LB2RUY7 222 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 PROP1O75360 226 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 CER1O95813 267 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 DEFB125Q8N687 156 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 C11orf52Q96A22 123 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 ZNF503Q96F45 646 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 METRNQ9UJH8 293 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 ICE1Q9Y2F5 2266 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 CEP192Q8TEP8 1941 aa11.11□□□□□ -0.63
SKA3-201ENST00000298260 TNRC6AQ8NDV7 1962 aaKnown RBP11.1□□□□□ -0.63
SKA3-201ENST00000298260 SMG1Q96Q15 3661 aaKnown RBP11.1□□□□□ -0.63
SKA3-201ENST00000298260 M0R1X1 148 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 PRB4P10163 310 aaPredicted RBP11.1□□□□□ -0.63
SKA3-201ENST00000298260 FOXF2Q12947 444 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 MLANAQ16655 118 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 TMEM249Q2WGJ8 235 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 Q5PR19 223 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 UTF1Q5T230 341 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 TMEM70Q9BUB7 260 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 ZNF430Q9H8G1 570 aaPredicted RBP11.1□□□□□ -0.63
SKA3-201ENST00000298260 MBNL3Q9NUK0 354 aaKnown RBP11.1□□□□□ -0.63
SKA3-201ENST00000298260 MRPL27Q9P0M9 148 aaKnown RBP11.1□□□□□ -0.63
SKA3-201ENST00000298260 ADAMTS20P59510 1910 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 PRSS46E5RG02 174 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 K7ERU9 68 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 GFRA3O60609 400 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 SSR4P51571 173 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 GUSBP11Q6P575 273 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 LINC00696Q6ZRV3 163 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 SSX8Q7RTT4 187 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 LHFPL4Q7Z7J7 247 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 NINJ1Q92982 152 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 KCNIP1Q9NZI2 227 aa11.1□□□□□ -0.63
SKA3-201ENST00000298260 TRAV5A0A0B4J249 113 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 SMIM27A0A1W2PRY6 76 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 PINLYPA6NC86 204 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 RPL39P5Q59GN2 51 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 MORN5Q5VZ52 161 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 OR4A16Q8NH70 328 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 ABCA1O95477 2261 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 A0A1W2PQM1 296 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 K7ESF4 209 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 NXPH1P58417 271 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 RPS19BP1Q86WX3 136 aaKnown RBP11.09□□□□□ -0.63
SKA3-201ENST00000298260 NUP35Q8NFH5 326 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 CT55Q8WUE5 264 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 TXNDC17Q9BRA2 123 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 OSTCQ9NRP0 149 aa11.09□□□□□ -0.63
SKA3-201ENST00000298260 PATE3B3GLJ2 98 aa11.08□□□□□ -0.63
SKA3-201ENST00000298260 REG1AP05451 166 aa11.08□□□□□ -0.63
SKA3-201ENST00000298260 C3AR1Q16581 482 aa11.08□□□□□ -0.63
SKA3-201ENST00000298260 FAM120AOSQ5T036 256 aa11.08□□□□□ -0.63
SKA3-201ENST00000298260 SLC25A34Q6PIV7 304 aa11.08□□□□□ -0.63
SKA3-201ENST00000298260 SPEM1Q8N4L4 309 aa11.08□□□□□ -0.63
SKA3-201ENST00000298260 CHRDL1Q9BU40 450 aa11.08□□□□□ -0.63
SKA3-201ENST00000298260 IZUMO1RA6ND01 250 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 J3QT63 122 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 P04436 131 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 CELA3AP09093 270 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 OR13A1Q8NGR1 328 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 OR1B1Q8NGR6 318 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 PLEKHA3Q9HB20 300 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 LSM4Q9Y4Z0 139 aaKnown RBP11.08□□□□□ -0.64
SKA3-201ENST00000298260 FAM231BA6NCW3 169 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 IGLV3-19P01714 112 aa11.08□□□□□ -0.64
SKA3-201ENST00000298260 ZNF137PP52743 207 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms