RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 VDAC2P45880 294 aaPredicted RBP12.57□□□□□ -0.4
LSM6-201ENST00000296581 ZNF674Q2M3X9 581 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 PIMREGQ9BSJ6 248 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 PARP11Q9NR21 331 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 TCF19Q9Y242 345 aa12.57□□□□□ -0.4
LSM6-201ENST00000296581 STRAPQ9Y3F4 350 aaKnown RBP12.57□□□□□ -0.4
LSM6-201ENST00000296581 IGHV2-70DA0A0C4DH43 119 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 SMCO3A2RU48 225 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 ODF3BA8MYP8 253 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 ATP5J2P56134 94 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 HSPE1P61604 102 aaKnown RBP12.56□□□□□ -0.4
LSM6-201ENST00000296581 HBG1P69891 147 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 HBG2P69892 147 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 JOSD1Q15040 202 aaPredicted RBP12.56□□□□□ -0.4
LSM6-201ENST00000296581 SPINK9Q5DT21 86 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 SIRPDQ9H106 197 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 PLA2G2EQ9NZK7 142 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 ZNF257Q9Y2Q1 563 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 FAM208BQ5VWN6 2430 aa12.56□□□□□ -0.4
LSM6-201ENST00000296581 IGHV1-3A0A0C4DH29 117 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 PMS2P5A8MQ11 134 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 M0R143 59 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 SULT1A2P50226 295 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 LCN2P80188 198 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 AKR1C8PQ5T2L2 129 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 POLR3KQ9Y2Y1 108 aaPredicted RBP12.55□□□□□ -0.4
LSM6-201ENST00000296581 LRRK2Q5S007 2527 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 UMAD1C9J7I0 102 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 KBTBD11O94819 623 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 IGLV2-23P01705 113 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 HSD17B11Q8NBQ5 300 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 RPEQ96AT9 228 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 INSIG2Q9Y5U4 225 aa12.55□□□□□ -0.4
LSM6-201ENST00000296581 FOXH1O75593 365 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 GZMBP10144 247 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 TMEM11P17152 192 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 HTR1DP28221 377 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 RPS16P62249 146 aaKnown RBP12.54□□□□□ -0.4
LSM6-201ENST00000296581 LDLRAD2Q5SZI1 272 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 TPTE2P1Q5T6R2 138 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 CLEC2AQ6UVW9 174 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 VMO1Q7Z5L0 202 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 THNSL2Q86YJ6 484 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 OR4A5Q8NH83 315 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 HIST1H2BLQ99880 126 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 OR51B2Q9Y5P1 312 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 C15orf62A8K5M9 175 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 LGALS7P47929 136 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 KLRD1Q13241 179 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 Q6ZRG5 221 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 VSTM2AQ8TAG5 236 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 TMEM167AQ8TBQ9 72 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 SH3BGRL3Q9H299 93 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 FKBP11Q9NYL4 201 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 DPM3Q9P2X0 92 aa12.54□□□□□ -0.4
LSM6-201ENST00000296581 A0A1W2PPI3 338 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 SCAF4O95104 1147 aaKnown RBP12.53□□□□□ -0.4
LSM6-201ENST00000296581 ATP6V0CP27449 155 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 SLC38A11Q08AI6 406 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 DMRTA1Q5VZB9 504 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 LYPD6BQ8NI32 183 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 HIPK2Q9H2X6 1198 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 TNCP24821 2201 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 HOXB4P17483 251 aaPredicted RBP12.53□□□□□ -0.4
LSM6-201ENST00000296581 USF1P22415 310 aaPredicted RBP12.53□□□□□ -0.4
LSM6-201ENST00000296581 MOB3BQ86TA1 216 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 OR5B3Q8NH48 314 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 NRGNQ92686 78 aa12.53□□□□□ -0.4
LSM6-201ENST00000296581 GNPNAT1Q96EK6 184 aaPredicted RBP12.53□□□□□ -0.4
LSM6-201ENST00000296581 PARD6GQ9BYG4 376 aaPredicted RBP12.53□□□□□ -0.4
LSM6-201ENST00000296581 HEYLQ9NQ87 328 aaPredicted RBP12.53□□□□□ -0.4
LSM6-201ENST00000296581 IGHV3-72A0A0B4J1Y9 119 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 IGHV4-61A0A0C4DH41 118 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 IFNA5P01569 189 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 MYOD1P15172 320 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 CEACAM3P40198 252 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 PRCDQ00LT1 54 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 ATP6V1FQ16864 119 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 OR8G2PQ6IF36 304 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 RITA1Q96K30 269 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 SCRT1Q9BWW7 348 aa12.52□□□□□ -0.41
LSM6-201ENST00000296581 TEX50A0A1B0GTY4 177 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 CXCL1P09341 107 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 GUK1Q16774 197 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 VMA21Q3ZAQ7 101 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 OR10P1Q8NGE3 313 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 PINX1Q96BK5 328 aaKnown RBP12.51□□□□□ -0.41
LSM6-201ENST00000296581 PERPQ96FX8 193 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 ACTR3CQ9C0K3 210 aaPredicted RBP12.51□□□□□ -0.41
LSM6-201ENST00000296581 PRSS47A8MTI9 375 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 RPLP1P05386 114 aaKnown RBP12.51□□□□□ -0.41
LSM6-201ENST00000296581 PLA2G2AP14555 144 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 SNCAP37840 140 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 DSCR9P59020 149 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 RBX1P62877 108 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 RPL8P62917 257 aaKnown RBP12.51□□□□□ -0.41
LSM6-201ENST00000296581 Q8WTZ3 238 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 TBX15Q96SF7 602 aa12.51□□□□□ -0.41
LSM6-201ENST00000296581 IGHV4-30-2A0A087WSY4 118 aa12.5□□□□□ -0.41
LSM6-201ENST00000296581 LRRC75BQ2VPJ9 315 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms