RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 B4DSR2 109 aa18.19■□□□□ 0.5
CDX1-201ENST00000231656 NUPL2O15504 423 aaKnown RBP18.19■□□□□ 0.5
CDX1-201ENST00000231656 TOX4O94842 621 aa18.19■□□□□ 0.5
CDX1-201ENST00000231656 MSMBP08118 114 aa18.19■□□□□ 0.5
CDX1-201ENST00000231656 KLRD1Q13241 179 aa18.19■□□□□ 0.5
CDX1-201ENST00000231656 HCP5Q6MZN7 132 aa18.19■□□□□ 0.5
CDX1-201ENST00000231656 TREML4Q6UXN2 200 aa18.19■□□□□ 0.5
CDX1-201ENST00000231656 MAP1LC3B2A6NCE7 125 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 MPDU1O75352 247 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 RPL8P62917 257 aaKnown RBP18.18■□□□□ 0.5
CDX1-201ENST00000231656 CLRN3Q8NCR9 226 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 OR11H6Q8NGC7 330 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 OR4P4Q8NGL7 312 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 VSTM2AQ8TAG5 236 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 MAP1LC3BQ9GZQ8 125 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 NDUFA4L2Q9NRX3 87 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 ZANQ9Y493 2812 aa18.18■□□□□ 0.5
CDX1-201ENST00000231656 LOC102723971A0A1B0GUV8 181 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 SMCO3A2RU48 225 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 SRP19P09132 144 aaKnown RBP18.17■□□□□ 0.5
CDX1-201ENST00000231656 FGF8P55075 233 aaPredicted RBP18.17■□□□□ 0.5
CDX1-201ENST00000231656 PAX8Q06710 450 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 BSXQ3C1V8 233 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 RITA1Q96K30 269 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 ITPR3Q14573 2671 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 ARSJQ5FYB0 599 aaPredicted RBP18.17■□□□□ 0.5
CDX1-201ENST00000231656 MAPK1IP1LQ8NDC0 245 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 OR10G4Q8NGN3 311 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 OR10G9Q8NGN4 311 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 OR10G7Q8NGN6 311 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 TBX15Q96SF7 602 aa18.17■□□□□ 0.5
CDX1-201ENST00000231656 LY6LH3BQJ8 138 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 HSPB1P04792 205 aaKnown RBP18.16■□□□□ 0.5
CDX1-201ENST00000231656 OR13C7P0DN81 318 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 HOXB4P17483 251 aaPredicted RBP18.16■□□□□ 0.5
CDX1-201ENST00000231656 ATP5IP56385 69 aaPredicted RBP18.16■□□□□ 0.5
CDX1-201ENST00000231656 KHDC3LQ587J8 217 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 OR1L8Q8NGR8 309 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 MGST2Q99735 147 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 COMMD5Q9GZQ3 224 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 SLC39A9Q9NUM3 307 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 GNG13Q9P2W3 67 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 AMMECR1Q9Y4X0 333 aaPredicted RBP18.16■□□□□ 0.5
CDX1-201ENST00000231656 LSM4Q9Y4Z0 139 aaKnown RBP18.16■□□□□ 0.5
CDX1-201ENST00000231656 CELSR1Q9NYQ6 3014 aa18.16■□□□□ 0.5
CDX1-201ENST00000231656 IGHV3-72A0A0B4J1Y9 119 aa18.15■□□□□ 0.5
CDX1-201ENST00000231656 IGHV1-3A0A0C4DH29 117 aa18.15■□□□□ 0.5
CDX1-201ENST00000231656 CTXND1A0A1B0GTU2 59 aa18.15■□□□□ 0.5
CDX1-201ENST00000231656 INS-IGF2F8WCM5 200 aa18.15■□□□□ 0.5
CDX1-201ENST00000231656 RXFP4Q8TDU9 374 aa18.15■□□□□ 0.5
CDX1-201ENST00000231656 ZNF469Q96JG9 3925 aaPredicted RBP18.15■□□□□ 0.5
CDX1-201ENST00000231656 ODF3BA8MYP8 253 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 FNDC10F2Z333 226 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 SOX15O60248 233 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 EIF3GO75821 320 aaKnown RBP eCLIP18.14■□□□□ 0.5
CDX1-201ENST00000231656 RNASE2P10153 161 aaKnown RBP18.14■□□□□ 0.5
CDX1-201ENST00000231656 LGALS7P47929 136 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 PMS2P11Q13670 270 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 MRGPRG-AS1Q2M3A8 158 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 VMA21Q3ZAQ7 101 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 C2orf83Q53S99 150 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 OR10W1Q8NGF6 305 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 FOXC2Q99958 501 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 ZNF430Q9H8G1 570 aaPredicted RBP18.14■□□□□ 0.5
CDX1-201ENST00000231656 SLC25A22Q9H936 323 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 NPVFQ9HCQ7 196 aa18.14■□□□□ 0.5
CDX1-201ENST00000231656 CGB1A6NKQ9 187 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 E7EUB6 86 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 SLC25A17O43808 307 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 BCL2P10415 239 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 OPRK1P41145 380 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 LINC01356Q8N9X3 169 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 WFDC11Q8NEX6 87 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 GGTLC1Q9BX51 225 aa18.14■□□□□ 0.49
CDX1-201ENST00000231656 ACTR3CQ9C0K3 210 aaPredicted RBP18.14■□□□□ 0.49
CDX1-201ENST00000231656 TSPAN4O14817 238 aa18.13■□□□□ 0.49
CDX1-201ENST00000231656 ACOT6Q3I5F7 207 aaPredicted RBP18.13■□□□□ 0.49
CDX1-201ENST00000231656 FAM122CQ6P4D5 195 aa18.13■□□□□ 0.49
CDX1-201ENST00000231656 TMEM88Q6PEY1 159 aa18.13■□□□□ 0.49
CDX1-201ENST00000231656 TPSG1Q9NRR2 321 aa18.13■□□□□ 0.49
CDX1-201ENST00000231656 HIF1ANQ9NWT6 349 aa18.13■□□□□ 0.49
CDX1-201ENST00000231656 TRAV20A0A0B4J274 112 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 SOHLH1Q5JUK2 328 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 LDLRAD2Q5SZI1 272 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 MOB3BQ86TA1 216 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 CBLN2Q8IUK8 224 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 AKAP9Q99996 3911 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 A0A1W2PRD5 423 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 A0A1W2PRF3 423 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 A0A1W2PRM7 423 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 ZFP92A6NM28 416 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 SEC14L6B5MCN3 397 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 YIF1AO95070 293 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 CRYGBP07316 175 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 FBP1P09467 338 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 HTR1DP28221 377 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 TEX45Q8NA69 505 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 RPEQ96AT9 228 aa18.12■□□□□ 0.49
CDX1-201ENST00000231656 A0A1W2PN81 502 aa18.11■□□□□ 0.49
CDX1-201ENST00000231656 CYB5BO43169 146 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms