RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 YPEL2Q96QA6 119 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 TBX6O95947 436 aaPredicted RBP11.4□□□□□ -0.58
SF3A1-201ENST00000215793 ZIC4Q8N9L1 334 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 TMEM170BQ5T4T1 132 aa11.4□□□□□ -0.59
SF3A1-201ENST00000215793 NEUROG1Q92886 237 aa11.4□□□□□ -0.59
SF3A1-201ENST00000215793 RPP21Q9H633 154 aaKnown RBP11.4□□□□□ -0.59
SF3A1-201ENST00000215793 SCN4AP35499 1836 aa11.4□□□□□ -0.59
SF3A1-201ENST00000215793 GPR183P32249 361 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 TTC9CQ8N5M4 171 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 TMEM160Q9NX00 188 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 DOCK3Q8IZD9 2030 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 SCO2A0A1W2PP80 73 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 CCL1P22362 96 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 LHX2P50458 406 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 SLC17A3O00476 420 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 SDF2L1Q9HCN8 221 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 ABCA1O95477 2261 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 PEF1Q9UBV8 284 aaKnown RBP11.39□□□□□ -0.59
SF3A1-201ENST00000215793 ATAD5Q96QE3 1844 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 CACNA1GO43497 2377 aa11.39□□□□□ -0.59
SF3A1-201ENST00000215793 TRAV8-6A0A0B4J262 113 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 SMIM13P0DJ93 91 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 TCF23Q7RTU1 214 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 C9orf106Q8NAJ2 232 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 TMEM101Q96IK0 257 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 IGHV3-49A0A0A0MS15 119 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 CD69Q07108 199 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 FAM168AQ92567 244 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 APOHP02749 345 aaPredicted RBP11.38□□□□□ -0.59
SF3A1-201ENST00000215793 ATP5G3P48201 142 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 ZNF362Q5T0B9 420 aaPredicted RBP11.38□□□□□ -0.59
SF3A1-201ENST00000215793 PLPPR1Q8TBJ4 325 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 SEMA5BQ9P283 1151 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 ANKRD31Q8N7Z5 1873 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 IGKV3OR2-268A0A0C4DH90 116 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 UPK2O00526 184 aa11.38□□□□□ -0.59
SF3A1-201ENST00000215793 ALKBH7Q9BT30 221 aaPredicted RBP11.38□□□□□ -0.59
SF3A1-201ENST00000215793 FAM89BQ8N5H3 189 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 TBL2Q9Y4P3 447 aaKnown RBP11.37□□□□□ -0.59
SF3A1-201ENST00000215793 ZNF646O15015 1829 aaPredicted RBP11.37□□□□□ -0.59
SF3A1-201ENST00000215793 COL11A1P12107 1806 aaPredicted RBP11.37□□□□□ -0.59
SF3A1-201ENST00000215793 TRAV14DV4A0A0A6YYC5 116 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 MIR17HGQ75NE6 70 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 MRAP2Q96G30 205 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 WNT10AQ9GZT5 417 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 TUBA4BQ9H853 241 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 ABCA7Q8IZY2 2146 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 PSMB11A5LHX3 300 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 RNASE1P07998 156 aaKnown RBP11.37□□□□□ -0.59
SF3A1-201ENST00000215793 SAA1P0DJI8 122 aaPredicted RBP11.37□□□□□ -0.59
SF3A1-201ENST00000215793 ORMDL3Q8N138 153 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 OR4X2Q8NGF9 303 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 C18orf15Q96N68 181 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 SCN2AQ99250 2005 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 IGHV3-23P01764 117 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 C21orf62-AS1Q17RA5 79 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 LEMD1Q68G75 181 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 RNASE6Q93091 150 aaKnown RBP11.37□□□□□ -0.59
SF3A1-201ENST00000215793 LRRC37AA6NMS7 1700 aa11.37□□□□□ -0.59
SF3A1-201ENST00000215793 NBR2O15453 112 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 PAX1P15863 534 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 FER1L6-AS1Q8NA97 138 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 C18orf12Q96KH6 178 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 SCGB3A1Q96QR1 104 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 C7orf69Q9H7B7 122 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 S4R3C0 116 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 CASP8AP2Q9UKL3 1982 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 TMEM262E9PQX1 116 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 CELA3BP08861 270 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 GCSAMLQ5JQS6 135 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 Q9H3A6 140 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 IGKV1-9A0A0C4DH69 117 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 CCL20P78556 96 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 PLAURQ03405 335 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 NR2C2APQ86WQ0 139 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 OR13C6PQ8NH95 151 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 OTORQ9NRC9 128 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 SAA2-SAA4A0A096LPE2 208 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 IZUMO1RA6ND01 250 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 C15orf61A6NNL5 157 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 SAA2P0DJI9 122 aaPredicted RBP11.36□□□□□ -0.59
SF3A1-201ENST00000215793 PVRIGQ6DKI7 326 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 C2orf88Q9BSF0 95 aa11.36□□□□□ -0.59
SF3A1-201ENST00000215793 MPZP25189 248 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 CTAG1AP78358 180 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 TTC32Q5I0X7 151 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 ZNF497Q6ZNH5 498 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 ACACAQ13085 2346 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 IGHV3-66A0A0C4DH42 116 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 CLEC19AQ6UXS0 136 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 SLC50A1Q9BRV3 221 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 RIF1Q5UIP0 2472 aaKnown RBP11.35□□□□□ -0.59
SF3A1-201ENST00000215793 IGKV1D-13A0A0B4J2D9 117 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 IGKV1-13P0DP09 117 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 MYOD1P15172 320 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 CCL3L1P16619 93 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 ASCL2Q99929 193 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 RNF126Q9BV68 326 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 PARP14Q460N5 1801 aa11.35□□□□□ -0.59
SF3A1-201ENST00000215793 C1QTNF9BB2RNN3 333 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms