RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 K7EN84 100 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 OR7C1O76099 320 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-213ENST00000636759 WFDC2Q14508 124 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 SH2D6Q7Z4S9 175 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 SPACA3Q8IXA5 215 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 TTC9CQ8N5M4 171 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 OR1L3Q8NH93 324 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 MTCH1Q9NZJ7 389 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF391Q9UJN7 358 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 PIGLQ9Y2B2 252 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 A0A0J9YY10 115 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 CRXO43186 299 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-213ENST00000636759 SPRY1O43609 319 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-213ENST00000636759 OR9G9P0C7N8 305 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 EDDM3BP56851 147 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 TAS2R45P59539 299 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-213ENST00000636759 LYSMD4Q5XG99 296 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 TMEM211Q6ICI0 200 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 C2orf91Q6ZV80 131 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 OR4X2Q8NGF9 303 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 PATE1Q8WXA2 126 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 C10orf35Q96D05 121 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 TRIB1Q96RU8 372 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 C1QTNF4Q9BXJ3 329 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 RAB1BQ9H0U4 201 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 OSTCQ9NRP0 149 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 RABAC1Q9UI14 185 aa5.71□□□□□ -1.5
SCN1A-213ENST00000636759 LOC102723996A0A087X1L8 192 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1W2PPC4 97 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 IZUMO1RA6ND01 250 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 PDCD6O75340 191 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 CXorf1O96002 111 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 OR5AL1P0C617 328 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 ARL14EPLP0DKL9 152 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 PSG2P11465 335 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 TFF3Q07654 80 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 RTL8BQ17RB0 113 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 ZFAND6Q6FIF0 208 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 Q6ZS52 159 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF295-AS1Q8N0V1 137 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 TEX29Q8N6K0 151 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 SYT8Q8NBV8 401 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 SLC37A2Q8TED4 501 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 DGAT2Q96PD7 388 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 RNASE7Q9H1E1 156 aaKnown RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 MED29Q9NX70 200 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 BSNQ9UPA5 3926 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 TMED7-TICAM2A0A0A6YYA0 188 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 hCG_38984A0A1B0GV85 526 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1B0GWB2 263 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1B0GX78 115 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 SH2D7A6NKC9 451 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 SHISA8B8ZZ34 492 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 PGLYRP1O75594 196 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 AGFG2O95081 481 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 IGHV3-7P01780 117 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 FCGR2BP31994 310 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF585BQ52M93 769 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 PDLIM3Q53GG5 364 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 IGF2-ASQ6U949 168 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 C17orf82Q86X59 251 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 OR9G4Q8NGQ1 327 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 ARPC1AQ92747 370 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 BORCS8Q96FH0 119 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 OR2W1Q9Y3N9 320 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 hADV38S2A0JD32 116 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 RER1O15258 196 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 DHRS3O75911 302 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 UTS2O95399 124 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 CAMPP49913 170 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 ATP5J2P56134 94 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 FBXW4P57775 412 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 PDCD1Q15116 288 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 CENPWQ5EE01 88 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 IBA57Q5T440 356 aaKnown RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 SLC23A3Q6PIS1 610 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 OSR2Q8N2R0 312 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 C16orf52Q8NHV5 167 aa5.7□□□□□ -1.5
SCN1A-213ENST00000636759 H1FXQ92522 213 aaKnown RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 SRSF8Q9BRL6 282 aaKnown RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 MCRIP2Q9BUT9 160 aaKnown RBP5.7□□□□□ -1.5
SCN1A-213ENST00000636759 IGKV1D-43A0A0B4J1Z2 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 IGHV1OR15-9A0A0B4J2B8 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1W2PR77 199 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1W2PRE2 83 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 APOMO95445 188 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 IGHMP01871 453 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 PVRP15151 417 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CCL1P22362 96 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GCSHP23434 173 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 TMPRSS3P57727 454 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 RPS16P62249 146 aaKnown RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 KLF5Q13887 457 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 PIGYQ3MUY2 71 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CRIP3Q6Q6R5 217 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 PQLC2Q6ZP29 291 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 Q6ZRM9 215 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF808Q8N4W9 903 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 EMC6Q9BV81 110 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms