RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TGOLN2O43493 480 aa12□□□□□ -0.49
CLN3-246ENST00000636228 ZNF207O43670 478 aaKnown RBP12□□□□□ -0.49
CLN3-246ENST00000636228 TRAPPC2P0DI81 140 aa12□□□□□ -0.49
CLN3-246ENST00000636228 TRAPPC2BP0DI82 140 aa12□□□□□ -0.49
CLN3-246ENST00000636228 GNRHRP30968 328 aa12□□□□□ -0.49
CLN3-246ENST00000636228 MFAP2P55001 183 aa12□□□□□ -0.49
CLN3-246ENST00000636228 WT1-ASQ06250 92 aa12□□□□□ -0.49
CLN3-246ENST00000636228 POU2AF1Q16633 256 aa12□□□□□ -0.49
CLN3-246ENST00000636228 DEFB135Q30KP9 77 aa12□□□□□ -0.49
CLN3-246ENST00000636228 OR5AP2Q8NGF4 316 aa12□□□□□ -0.49
CLN3-246ENST00000636228 TMEM190Q8WZ59 177 aa12□□□□□ -0.49
CLN3-246ENST00000636228 LINC00476Q8WZB0 136 aa12□□□□□ -0.49
CLN3-246ENST00000636228 FCGR1BQ92637 280 aa12□□□□□ -0.49
CLN3-246ENST00000636228 CHRDL1Q9BU40 450 aa12□□□□□ -0.49
CLN3-246ENST00000636228 YTHDF1Q9BYJ9 559 aaKnown RBP12□□□□□ -0.49
CLN3-246ENST00000636228 THYN1Q9P016 225 aa12□□□□□ -0.49
CLN3-246ENST00000636228 NSG2Q9Y328 171 aa12□□□□□ -0.49
CLN3-246ENST00000636228 ETV7Q9Y603 341 aa12□□□□□ -0.49
CLN3-246ENST00000636228 SPRY2O43597 315 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 SERPINE2P07093 398 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 ELLP55199 621 aaPredicted RBP11.99□□□□□ -0.49
CLN3-246ENST00000636228 LYG2Q86SG7 212 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 SLC38A6Q8IZM9 456 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 GDPD1Q8N9F7 314 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 VN1R17PQ8TDU5 208 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 C20orf24Q9BUV8 137 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 C5orf66Q9H5L9 145 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 PLEKHA2Q9HB19 425 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 DIABLOQ9NR28 239 aa11.99□□□□□ -0.49
CLN3-246ENST00000636228 RLN1P04808 185 aa11.98□□□□□ -0.49
CLN3-246ENST00000636228 RPL35AP18077 110 aaKnown RBP11.98□□□□□ -0.49
CLN3-246ENST00000636228 TGFBR1P36897 503 aa11.98□□□□□ -0.49
CLN3-246ENST00000636228 RFX2P48378 723 aa11.98□□□□□ -0.49
CLN3-246ENST00000636228 UBAC2Q8NBM4 344 aa11.98□□□□□ -0.49
CLN3-246ENST00000636228 SPAG8Q99932 426 aaPredicted RBP11.98□□□□□ -0.49
CLN3-246ENST00000636228 SRSF8Q9BRL6 282 aaKnown RBP11.98□□□□□ -0.49
CLN3-246ENST00000636228 EHFQ9NZC4 300 aa11.98□□□□□ -0.49
CLN3-246ENST00000636228 TSPAN4O14817 238 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 PGLYRP1O75594 196 aaPredicted RBP11.97□□□□□ -0.49
CLN3-246ENST00000636228 KRASP01116 189 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 PMP2P02689 132 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 LPAR6P43657 344 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 APOC4P55056 127 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 HERV-K104P61576 105 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 ODF3L2Q3SX64 289 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 KCTD21Q4G0X4 260 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 OR1L8Q8NGR8 309 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 OR5B3Q8NH48 314 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 CD300LFQ8TDQ1 290 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 SCARB1Q8WTV0 552 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 FCAMRQ8WWV6 532 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 ZNF2Q9BSG1 426 aaPredicted RBP11.97□□□□□ -0.49
CLN3-246ENST00000636228 IFT46Q9NQC8 304 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 DAZ1Q9NQZ3 744 aaKnown RBP11.97□□□□□ -0.49
CLN3-246ENST00000636228 NDUFA4L2Q9NRX3 87 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 COMMD9Q9P000 198 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 OR51B2Q9Y5P1 312 aa11.97□□□□□ -0.49
CLN3-246ENST00000636228 A0A0A6YYH2 397 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 A6NJ64 397 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 MARCH11A6NNE9 402 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 F8W735 103 aaPredicted RBP11.96□□□□□ -0.49
CLN3-246ENST00000636228 BMI1P35226 326 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 ADMP35318 185 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 G6PCP35575 357 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 CBX5P45973 191 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 SCAND1P57086 179 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 ERVK-16P61578 105 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 NEDD8Q15843 81 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 LAMTOR1Q6IAA8 161 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 Q6ZWC4 215 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 WFDC3Q8IUB2 231 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 BSCL2Q96G97 398 aaPredicted RBP11.96□□□□□ -0.49
CLN3-246ENST00000636228 C21orf62Q9NYP8 219 aa11.96□□□□□ -0.49
CLN3-246ENST00000636228 F11RQ9Y624 299 aaKnown RBP11.96□□□□□ -0.49
CLN3-246ENST00000636228 IGHV3-49A0A0A0MS15 119 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 DBX1A6NMT0 343 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 K7EIM0 57 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 NDUFA4O00483 81 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 CYB5BO43169 146 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 CTSDP07339 412 aaPredicted RBP11.95□□□□□ -0.5
CLN3-246ENST00000636228 F2RP25116 425 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 TNFRSF9Q07011 255 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 ZNF124Q15973 351 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 Q56UQ5 140 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 CEMP1Q6PRD7 247 aaPredicted RBP11.95□□□□□ -0.5
CLN3-246ENST00000636228 DHRS11Q6UWP2 260 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 APRG1Q8IVJ8 170 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 STPG3Q8N7X2 389 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 LSM10Q969L4 123 aaKnown RBP11.95□□□□□ -0.5
CLN3-246ENST00000636228 TP53TG1Q9Y2A0 90 aa11.95□□□□□ -0.5
CLN3-246ENST00000636228 NUPR2A6NF83 97 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 XRCC3O43542 346 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 TNFAIP8O95379 198 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 FGF2P09038 288 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 FCGR2BP31994 310 aaPredicted RBP11.94□□□□□ -0.5
CLN3-246ENST00000636228 TFPI2P48307 235 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 THOC7Q6I9Y2 204 aaKnown RBP11.94□□□□□ -0.5
CLN3-246ENST00000636228 MOB3AQ96BX8 217 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 RNF183Q96D59 192 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 DGCR14Q96DF8 476 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms