RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 DDB2Q92466 427 aa11.46□□□□□ -0.58
CLN3-242ENST00000635958 ADTRPQ96IZ2 230 aa11.46□□□□□ -0.58
CLN3-242ENST00000635958 PCGF1Q9BSM1 259 aa11.46□□□□□ -0.58
CLN3-242ENST00000635958 NIT2Q9NQR4 276 aa11.46□□□□□ -0.58
CLN3-242ENST00000635958 LIN7CQ9NUP9 197 aaKnown RBP11.46□□□□□ -0.58
CLN3-242ENST00000635958 TMEM242Q9NWH2 141 aa11.46□□□□□ -0.58
CLN3-242ENST00000635958 AMMECR1Q9Y4X0 333 aaPredicted RBP11.46□□□□□ -0.58
CLN3-242ENST00000635958 AKAP9Q99996 3911 aa11.46□□□□□ -0.58
CLN3-242ENST00000635958 H3BQ15 152 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 IL3RAP26951 378 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 BRWD1-AS2P59051 145 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 UBE2KP61086 200 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 PMS2P11Q13670 270 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 MAPK1IP1LQ8NDC0 245 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 OR51H1Q8NH63 302 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 NIPSNAP3BQ9BS92 247 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 PARD6GQ9BYG4 376 aaPredicted RBP11.45□□□□□ -0.58
CLN3-242ENST00000635958 GSN-AS1Q9NRJ2 163 aa11.45□□□□□ -0.58
CLN3-242ENST00000635958 ABCA1O95477 2261 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 J3QLI3 93 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 SCAF4O95104 1147 aaKnown RBP11.44□□□□□ -0.58
CLN3-242ENST00000635958 CT45A6P0DMU7 189 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 CT45A5P0DMU8 189 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 CT45A7P0DMV0 189 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 THBS3P49746 956 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 LINC00205P59089 165 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 POLR2GP62487 172 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLN3-242ENST00000635958 KLRD1Q13241 179 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 ZNF585BQ52M93 769 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 CLEC9AQ6UXN8 241 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 ETV3LQ6ZN32 361 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 OR5C1Q8NGR4 320 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 LSM10Q969L4 123 aaKnown RBP11.44□□□□□ -0.58
CLN3-242ENST00000635958 P2RX4Q99571 388 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 PUS1Q9Y606 427 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLN3-242ENST00000635958 ELOA3CA0A087WX78 387 aaPredicted RBP11.44□□□□□ -0.58
CLN3-242ENST00000635958 RBFOX2O43251 390 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLN3-242ENST00000635958 GATCO43716 136 aaKnown RBP11.44□□□□□ -0.58
CLN3-242ENST00000635958 ARG1P05089 322 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 HTR1DP28221 377 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 TAGLN2P37802 199 aaKnown RBP11.44□□□□□ -0.58
CLN3-242ENST00000635958 AKR1C3P42330 323 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 CDX1P47902 265 aaPredicted RBP11.44□□□□□ -0.58
CLN3-242ENST00000635958 FHITP49789 147 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 LDLRAD2Q5SZI1 272 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 ZNF429Q86V71 674 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 ZNF383Q8NA42 475 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 PSMG3Q9BT73 122 aaPredicted RBP11.44□□□□□ -0.58
CLN3-242ENST00000635958 C7orf69Q9H7B7 122 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 DPM3Q9P2X0 92 aa11.44□□□□□ -0.58
CLN3-242ENST00000635958 CENPVL3A0A0U1RRI6 287 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 SSSCA1O60232 199 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 TGFAP01135 160 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 DYNLT3P51808 116 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 SERF2P84101 59 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 ZNF816Q0VGE8 651 aaPredicted RBP11.43□□□□□ -0.58
CLN3-242ENST00000635958 DIAPH2-AS1Q14236 149 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 MINOS1Q5TGZ0 78 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 OR5AN1Q8NGI8 311 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 SCGB1C1Q8TD33 95 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 LHX4Q969G2 390 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 ISOC2Q96AB3 205 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 NABP2Q9BQ15 211 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 MMP24Q9Y5R2 645 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 WSB1Q9Y6I7 421 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 MINOS1-NBL1R4GNA1 71 aa11.43□□□□□ -0.58
CLN3-242ENST00000635958 FLNAP21333 2647 aaKnown RBP11.43□□□□□ -0.58
CLN3-242ENST00000635958 SEC14L6B5MCN3 397 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 TXNL1O43396 289 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 IFNA1P01562 189 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 SERPINE2P07093 398 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 ZNF16P17020 682 aaPredicted RBP11.42□□□□□ -0.58
CLN3-242ENST00000635958 S100A2P29034 98 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 KIR2DS2P43631 304 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 KIAA0141Q14154 515 aaPredicted RBP11.42□□□□□ -0.58
CLN3-242ENST00000635958 ICAM4Q14773 271 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 CYB5R2Q6BCY4 276 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 TGIF2LXQ8IUE1 241 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 CIARTQ8N365 385 aaPredicted RBP11.42□□□□□ -0.58
CLN3-242ENST00000635958 MBD3L1Q8WWY6 194 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 PINX1Q96BK5 328 aaKnown RBP11.42□□□□□ -0.58
CLN3-242ENST00000635958 C20orf24Q9BUV8 137 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 TBL2Q9Y4P3 447 aaKnown RBP11.42□□□□□ -0.58
CLN3-242ENST00000635958 DMRT1Q9Y5R6 373 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 OOSP1A8MZH6 123 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 CHST1O43916 411 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 NQO2P16083 231 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 CEACAM3P40198 252 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 RPS10P46783 165 aaKnown RBP11.42□□□□□ -0.58
CLN3-242ENST00000635958 TPTE2P1Q5T6R2 138 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 SLC16A13Q7RTY0 426 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 RARRES2Q99969 163 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 MRPL20Q9BYC9 149 aaKnown RBP11.42□□□□□ -0.58
CLN3-242ENST00000635958 CTDSP1Q9GZU7 261 aa11.42□□□□□ -0.58
CLN3-242ENST00000635958 CSPG4Q6UVK1 2322 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 LOC102723971A0A1B0GUV8 181 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 RAMP3O60896 148 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 CLN5O75503 358 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 IGKV1-39P01597 117 aa11.41□□□□□ -0.58
CLN3-242ENST00000635958 IGKV1D-39P04432 117 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms