RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 LPCAT4Q643R3 524 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 KRTAP26-1Q6PEX3 210 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 FAM19A5Q7Z5A7 132 aaPredicted RBP-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 TBC1D19Q8N5T2 526 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 ANKRD7Q92527 254 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 NDEL1Q9GZM8 345 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 HRASLSQ9HDD0 168 aa-0.86□□□□□ -2.55
SCN1A-211ENST00000635893 I3L521 148 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 SULT1C2O00338 296 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 CCL25O15444 150 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 KRT7P08729 469 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 SPI1P17947 270 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 NFYAP23511 347 aaPredicted RBP-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 RAB13P51153 203 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 C18orf21Q32NC0 220 aaPredicted RBP-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 Q6ZQT0 140 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 OR10D3Q8NH80 312 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 TMEM239Q8WW34 195 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 MROQ9BYG7 248 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 MRM2Q9UI43 246 aaKnown RBP-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 BZW2Q9Y6E2 419 aaKnown RBP-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 LPAP08519 4548 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 TMEM94Q12767 1356 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 MTUS2Q5JR59 1369 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 KIAA0232Q92628 1395 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 DCHS2Q6V1P9 2916 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 MUC4Q99102 2169 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 BIRC6Q9NR09 4857 aa-0.87□□□□□ -2.55
SCN1A-211ENST00000635893 RYR2Q92736 4967 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 SYNGR1O43759 233 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 TNFAIP8O95379 198 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 CTSDP07339 412 aaPredicted RBP-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 LINC00614P0C842 121 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 RPS4Y1P22090 263 aaKnown RBP-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 S100A7P31151 101 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 ZNF80P51504 273 aaPredicted RBP-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 HLA-DRB3P79483 266 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 KISS1Q15726 138 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 TEX261Q6UWH6 196 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 PHF13Q86YI8 300 aaPredicted RBP-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 C11orf40Q8WZ69 217 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 PPCDCQ96CD2 204 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 BBS2Q9BXC9 721 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 CXorf21Q9HAI6 301 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 COQ4Q9Y3A0 265 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 U3KQ87 197 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 CASP8AP2Q9UKL3 1982 aa-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 MAP1AP78559 2803 aaPredicted RBP-0.88□□□□□ -2.55
SCN1A-211ENST00000635893 NBEAL1Q6ZS30 2694 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 TRAV1-1A0A0B4J248 108 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 GOLGA6L19H0YKK7 550 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 KLF7O75840 302 aaPredicted RBP-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 APOMO95445 188 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 YEATS4O95619 227 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 CST4P01036 141 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 IGLV3-1P01715 115 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 CRYGAP11844 174 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 MIPP30301 263 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 OR4D2P58180 307 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 XIAPP98170 497 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 Q6ZS92 163 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 RORBQ92753 470 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 TMEM106AQ96A25 262 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 NSRP1Q9H0G5 558 aaKnown RBP-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 CCDC88AQ3V6T2 1871 aa-0.89□□□□□ -2.55
SCN1A-211ENST00000635893 STAB2Q8WWQ8 2551 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 CCDC160A6NGH7 325 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 AZIN1O14977 448 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 CD40LGP29965 261 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 HOXA6P31267 233 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 SSR2P43308 183 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 C4orf26Q17RF5 130 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 TNFAIP8L3Q5GJ75 292 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 LINC00575Q6W349 94 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 BLIDQ8IZY5 108 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 OR4D11Q8NGI4 311 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 OR2T27Q8NH04 317 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 RNASEH2CQ8TDP1 164 aaKnown RBP-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 SLC22A4Q9H015 551 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 TAS2R4Q9NYW5 299 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 MYCBP2O75592 4640 aa-0.9□□□□□ -2.55
SCN1A-211ENST00000635893 ASXL3Q9C0F0 2248 aa-0.91□□□□□ -2.55
SCN1A-211ENST00000635893 RNF213Q63HN8 5207 aa-0.91□□□□□ -2.55
SCN1A-211ENST00000635893 ZNF736B4DX44 427 aaPredicted RBP-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 KCNK1O00180 336 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 GP1BAP07359 652 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 SLC35E2BP0CK96 405 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 PVALBP20472 110 aaPredicted RBP-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 SPINT3P49223 89 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 RPS24P62847 133 aaKnown RBP-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 RPL18Q07020 188 aaKnown RBP-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 STX5Q13190 355 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 RNASE10Q5GAN6 216 aaKnown RBP-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 C1orf137Q5JT78 98 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 TMEM156Q8N614 296 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 SPERTQ8NA61 448 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 OR7G1Q8NGA0 311 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 STOML3Q8TAV4 291 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 SFT2D1Q8WV19 159 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 METTL9Q9H1A3 318 aa-0.91□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms