RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 TIMP3P35625 211 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 BPIFB3P59826 476 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 Q56UQ5 140 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 C9orf106Q8NAJ2 232 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 OR2D3Q8NGH3 330 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 ZCCHC14Q8WYQ9 949 aaKnown RBP10.43□□□□□ -0.74
MSH6-213ENST00000614496 GGTLC1Q9BX51 225 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 PCNX2A6NKB5 2137 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 MED13LQ71F56 2210 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 MAS1LP35410 378 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 LBHQ53QV2 105 aaPredicted RBP10.43□□□□□ -0.74
MSH6-213ENST00000614496 ACTL10Q5JWF8 245 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 TEX38Q6PEX7 206 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 FAM19A2Q8N3H0 131 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 OR1B1Q8NGR6 318 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 IL36BQ9NZH7 164 aa10.43□□□□□ -0.74
MSH6-213ENST00000614496 IGHV3-72A0A0B4J1Y9 119 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 CHEK1O14757 476 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 APCSP02743 223 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 ADTRPQ96IZ2 230 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 TXNDC17Q9BRA2 123 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 AGMATQ9BSE5 352 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 WNT10AQ9GZT5 417 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 hADV38S2A0JD32 116 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 NPIPB11E5RHQ5 1161 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 M0R2Z0 102 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 LINC00869P0C866 280 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 CHRNB4P30926 498 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 KRTAP27-1Q3LI81 207 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 CD177Q8N6Q3 437 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 MGST2Q99735 147 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 INTS1Q8N201 2190 aaKnown RBP10.42□□□□□ -0.74
MSH6-213ENST00000614496 A6NNC1 897 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 A8MWP6 167 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 GGCTO75223 188 aaKnown RBP10.42□□□□□ -0.74
MSH6-213ENST00000614496 EFNB3Q15768 340 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 KLHDC1Q8N7A1 406 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 VCANP13611 3396 aa10.42□□□□□ -0.74
MSH6-213ENST00000614496 IGHV2OR16-5A0A0B4J2B6 119 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 CSN3P07498 182 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 ZNF137PP52743 207 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 GOLT1BQ9Y3E0 138 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 J3QW42 95 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 CA1P00915 261 aaPredicted RBP10.41□□□□□ -0.74
MSH6-213ENST00000614496 REG1AP05451 166 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 SPATA45Q537H7 98 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 ZNF295-AS1Q8N0V1 137 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 TMEM106BQ9NUM4 274 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 CNIH1O95406 144 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 RNF151Q2KHN1 245 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 FAM216BQ8N7L0 139 aa10.41□□□□□ -0.74
MSH6-213ENST00000614496 YTHDF2Q9Y5A9 579 aaKnown RBP10.41□□□□□ -0.74
MSH6-213ENST00000614496 PRR33A8MZF0 331 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 TNFSF10P50591 281 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 ELOVL5Q9NYP7 299 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 TBL2Q9Y4P3 447 aaKnown RBP10.4□□□□□ -0.74
MSH6-213ENST00000614496 C20orf202A1L168 122 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 RBFOX2O43251 390 aaKnown RBP eCLIP10.4□□□□□ -0.741e-6■□□□□ 8.9
MSH6-213ENST00000614496 TCF21O43680 179 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 STAG3L2P0CL84 134 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 STAG3L3P0CL85 134 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 HCP5Q6MZN7 132 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 SPEGQ15772 3267 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 AKAP6Q13023 2319 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 C10orf113Q5VZT2 155 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 AP1S3Q96PC3 154 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 TNCP24821 2201 aa10.4□□□□□ -0.74
MSH6-213ENST00000614496 SAA2-SAA4A0A096LPE2 208 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 M0QZK8 103 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 SAA2P0DJI9 122 aaPredicted RBP10.4□□□□□ -0.75
MSH6-213ENST00000614496 CT45A6P0DMU7 189 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 CT45A5P0DMU8 189 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 CT45A7P0DMV0 189 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 VAMP3Q15836 100 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 ZNF124Q15973 351 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 CT45A1Q5HYN5 189 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 CT45A3Q8NHU0 189 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 FLYWCH2Q96CP2 140 aaKnown RBP10.4□□□□□ -0.75
MSH6-213ENST00000614496 EAF1Q96JC9 268 aaPredicted RBP10.4□□□□□ -0.75
MSH6-213ENST00000614496 PAXXQ9BUH6 204 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 ZNF355PQ9NSJ1 428 aa10.4□□□□□ -0.75
MSH6-213ENST00000614496 TFPI2P48307 235 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 HINT1P49773 126 aaPredicted RBP10.39□□□□□ -0.75
MSH6-213ENST00000614496 ERVK11-1P61568 191 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 MOB3BQ86TA1 216 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 C11orf42Q8N5U0 333 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 ABCA4P78363 2273 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 IGLV2-14P01704 120 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 MLANAQ16655 118 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 PDPNQ86YL7 162 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 OR1L8Q8NGR8 309 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 APC2O95996 2303 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 C8orf88P0DMB2 117 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 SRSF6Q13247 344 aaKnown RBP10.39□□□□□ -0.75
MSH6-213ENST00000614496 ACSF3Q4G176 576 aaPredicted RBP10.39□□□□□ -0.75
MSH6-213ENST00000614496 LHFPL4Q7Z7J7 247 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 ZCCHC24Q8N2G6 241 aaKnown RBP10.39□□□□□ -0.75
MSH6-213ENST00000614496 OR9G1Q8NH87 305 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 NPIPB3Q92617 1050 aa10.39□□□□□ -0.75
MSH6-213ENST00000614496 YPEL4Q96NS1 127 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms