RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TEX50A0A1B0GTY4 177 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 REG1AP05451 166 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 OR13C7P0DN81 318 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 SPNP16150 400 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 ZNF45Q02386 682 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 SLC25A24Q6NUK1 477 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 OR5B3Q8NH48 314 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 MCFD2Q8NI22 146 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 DYNC2LI1Q8TCX1 351 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 DYNLRB2Q8TF09 96 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 LSM10Q969L4 123 aaKnown RBP10.84□□□□□ -0.67
LIG1-218ENST00000599322 MIXL1Q9H2W2 232 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 TNCP24821 2201 aa10.84□□□□□ -0.67
LIG1-218ENST00000599322 TRAV3A0A0B4J244 114 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 FABP12A6NFH5 140 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 E7EUB6 86 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 B3GALNT1O75752 331 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 NDUFB8O95169 186 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 AKAIN1P0CW23 69 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 S100A5P33763 92 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 ARL3P36405 182 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 PPP5CP53041 499 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 PIGPP57054 158 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 RND3P61587 244 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 TRIM16LQ309B1 348 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 ZNF585BQ52M93 769 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 LCN12Q6JVE5 192 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 CLEC19AQ6UXS0 136 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 RNASE11Q8TAA1 199 aaKnown RBP10.83□□□□□ -0.68
LIG1-218ENST00000599322 ISOC1Q96CN7 298 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 PDCD10Q9BUL8 212 aa10.83□□□□□ -0.68
LIG1-218ENST00000599322 H3BMQ9 156 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 BMPR1BO00238 502 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 CTDSPLO15194 276 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 IGLV1-51P01701 117 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 TRBV12-3P01733 135 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 CD74P04233 296 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 MYOD1P15172 320 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 PTBP1P26599 531 aaKnown RBP eCLIP10.82□□□□□ -0.682e-12■■■■■ 50.3
LIG1-218ENST00000599322 AKR1C2P52895 323 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 GTSCR1Q86UQ5 136 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 SGPP2Q8IWX5 399 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 Q8N402 240 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 GDPD1Q8N9F7 314 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 SMIM4Q8WVI0 70 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 RRNAD1Q96FB5 475 aaKnown RBP10.82□□□□□ -0.68
LIG1-218ENST00000599322 SCGB3A2Q96PL1 93 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 PALMDQ9NP74 551 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 SIGLEC8Q9NYZ4 499 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 NSG2Q9Y328 171 aa10.82□□□□□ -0.68
LIG1-218ENST00000599322 LSM4Q9Y4Z0 139 aaKnown RBP10.82□□□□□ -0.68
LIG1-218ENST00000599322 NBEAL2Q6ZNJ1 2754 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 IGLV11-55A0A075B6I3 123 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 TEX13DA0A0J9YY54 714 aaPredicted RBP10.81□□□□□ -0.68
LIG1-218ENST00000599322 C3orf85A0A1B0GTC6 90 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 IGLC7A0M8Q6 106 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 ZNF320A2RRD8 509 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 OR2C1O95371 312 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 FAUP35544 74 aaKnown RBP10.81□□□□□ -0.68
LIG1-218ENST00000599322 ERHP84090 104 aaKnown RBP10.81□□□□□ -0.68
LIG1-218ENST00000599322 PLET1Q6UQ28 207 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 LHFPL1Q86WI0 220 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 OR10W1Q8NGF6 305 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 OR2K2Q8NGT1 345 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 VN1R17PQ8TDU5 208 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 FANCD2OSQ96PS1 177 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 PRRT1Q99946 306 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 NDUFA4L2Q9NRX3 87 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 GAR1Q9NY12 217 aaKnown RBP10.81□□□□□ -0.68
LIG1-218ENST00000599322 SCP2D1Q9UJQ7 156 aa10.81□□□□□ -0.68
LIG1-218ENST00000599322 C15orf61A6NNL5 157 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 PPP5D1E7EU14 171 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 IGHV3-23P01764 117 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 CLEC3BP05452 202 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 CTSDP07339 412 aaPredicted RBP10.8□□□□□ -0.68
LIG1-218ENST00000599322 PI3P19957 117 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 SURF2Q15527 256 aaPredicted RBP10.8□□□□□ -0.68
LIG1-218ENST00000599322 C11orf87Q6NUJ2 197 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 GPHB5Q86YW7 130 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 MARCH1Q8TCQ1 289 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 MRGPRFQ96AM1 343 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 ENY2Q9NPA8 101 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 KCNIP3Q9Y2W7 256 aa10.8□□□□□ -0.68
LIG1-218ENST00000599322 F11RQ9Y624 299 aaKnown RBP10.8□□□□□ -0.68
LIG1-218ENST00000599322 A0A1B0GW64 132 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 CGB1A6NKQ9 187 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 LGALS9O00182 355 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 IFNA17P01571 189 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 CSN3P07498 182 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 TNFSF8P32971 234 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 SUB1P53999 127 aaKnown RBP eCLIP10.79□□□□□ -0.681e-16■■■■■ 45.6
LIG1-218ENST00000599322 AP3S2P59780 193 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 HSPE1P61604 102 aaKnown RBP10.79□□□□□ -0.68
LIG1-218ENST00000599322 KLK9Q2XQG4 91 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 C19orf35Q6ZS72 473 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 OR13C8Q8NGS7 320 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 SEC22AQ96IW7 307 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 SLIRPQ9GZT3 109 aaKnown RBP10.79□□□□□ -0.68
LIG1-218ENST00000599322 PLEKHA3Q9HB20 300 aa10.79□□□□□ -0.68
LIG1-218ENST00000599322 TMEM14BQ9NUH8 114 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms