RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 C9orf170A2RU37 121 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 H3BUA1 57 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 BRI3O95415 125 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 OR4E1P0C645 316 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 PF4V1P10720 104 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 RAB9AP51151 201 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 RPL23AP62750 156 aaKnown RBP14.16□□□□□ -0.14
LIG1-216ENST00000598938 KIAA0141Q14154 515 aaPredicted RBP14.16□□□□□ -0.14
LIG1-216ENST00000598938 ANKRD55Q3KP44 614 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 THOC7Q6I9Y2 204 aaKnown RBP14.16□□□□□ -0.14
LIG1-216ENST00000598938 TMEM65Q6PI78 240 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 TTC9CQ8N5M4 171 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 LRTM2Q8N967 370 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 OR5B3Q8NH48 314 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 RNASE11Q8TAA1 199 aaKnown RBP14.16□□□□□ -0.14
LIG1-216ENST00000598938 NDUFA4L2Q9NRX3 87 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 NUDT15Q9NV35 164 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 SHPKQ9UHJ6 478 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 ZNF257Q9Y2Q1 563 aa14.16□□□□□ -0.14
LIG1-216ENST00000598938 PIGBOS1A0A0B4J2F0 54 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 IGLC7A0M8Q6 106 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 NPIPB5A8MRT5 1133 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 TRAPPC2P0DI81 140 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 TRAPPC2BP0DI82 140 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 MECP2P51608 486 aaKnown RBP14.15□□□□□ -0.14
LIG1-216ENST00000598938 DEFA1P59665 94 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 DEFA3P59666 94 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 C2orf68Q2NKX9 166 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 NSUN5P1Q3KNT7 163 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 KHDC1LQ5JSQ8 128 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 Q6ZRM9 215 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 LYZL2Q7Z4W2 148 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 LYG2Q86SG7 212 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 ZNF429Q86V71 674 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 CASTOR1Q8WTX7 329 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 GPR146Q96CH1 333 aa14.15□□□□□ -0.14
LIG1-216ENST00000598938 TRAV6A0A075B6T7 132 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 DUXBA0A1W2PPF3 345 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 A0A1W2PRX2 142 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 HLA-AP01891 365 aaKnown RBP14.14□□□□□ -0.15
LIG1-216ENST00000598938 CRYGCP07315 174 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 H2AFB2P0C5Z0 115 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 AREGP15514 252 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 CDX1P47902 265 aaPredicted RBP14.14□□□□□ -0.15
LIG1-216ENST00000598938 DHRS2Q13268 280 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 AARDQ4LEZ3 155 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 NMSQ5H8A3 153 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 ZNF491Q8N8L2 437 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 DUSP18Q8NEJ0 188 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 ENKURQ8TC29 256 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 SLA2Q9H6Q3 261 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 COA4Q9NYJ1 87 aa14.14□□□□□ -0.15
LIG1-216ENST00000598938 DUS4LO95620 317 aaKnown RBP14.13□□□□□ -0.15
LIG1-216ENST00000598938 CTRB1P17538 263 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 PSMB6P28072 239 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 HSPE1P61604 102 aaKnown RBP14.13□□□□□ -0.15
LIG1-216ENST00000598938 C4orf46Q504U0 113 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 CTRB2Q6GPI1 263 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 C18orf65Q6ZTR6 163 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 HSD17B13Q7Z5P4 300 aaPredicted RBP14.13□□□□□ -0.15
LIG1-216ENST00000598938 NRARPQ7Z6K4 114 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 OR10W1Q8NGF6 305 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 UBE2E2Q96LR5 201 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 MS4A10Q96PG2 267 aa14.13□□□□□ -0.15
LIG1-216ENST00000598938 ST8SIA3O43173 380 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 RBMXL2O75526 392 aaKnown RBP14.12□□□□□ -0.15
LIG1-216ENST00000598938 TSPAN15O95858 294 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 TRGV3P03979 118 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 RAB25P57735 213 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 PRCDQ00LT1 54 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 WT1-ASQ06250 92 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 KLK9Q2XQG4 91 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 C19orf35Q6ZS72 473 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 HINT2Q9BX68 163 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.12□□□□□ -0.15
LIG1-216ENST00000598938 ZNF355PQ9NSJ1 428 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 CACNG5Q9UF02 275 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 KLK9Q9UKQ9 250 aa14.12□□□□□ -0.15
LIG1-216ENST00000598938 TRBV9A0A0B4J1U6 114 aa14.11□□□□□ -0.15
LIG1-216ENST00000598938 REG1AP05451 166 aa14.11□□□□□ -0.15
LIG1-216ENST00000598938 TPPP2P59282 170 aa14.11□□□□□ -0.15
LIG1-216ENST00000598938 KLHL30-AS1Q8NEE0 82 aa14.11□□□□□ -0.15
LIG1-216ENST00000598938 PRH1P02810 166 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 SULT1A3P0DMM9 295 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 SULT1A4P0DMN0 295 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 OR13C7P0DN81 318 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 OR4F17Q8NGA8 305 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 OR52B4Q8NGK2 314 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 COQ8AQ8NI60 647 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 MITD1Q8WV92 249 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 C4orf3Q8WVX3 66 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 OR4F4Q96R69 305 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 GNB4Q9HAV0 340 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 PALMDQ9NP74 551 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 TMED3Q9Y3Q3 217 aa14.1□□□□□ -0.15
LIG1-216ENST00000598938 A0A1B0GU03 582 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 NUDT19A8MXV4 375 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 INS-IGF2F8WCM5 200 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 DHFRP00374 187 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 IFNA17P01571 189 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms