RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SRD5A1P18405 259 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 EIF2B2P49770 351 aaKnown RBP11.64□□□□□ -0.55
VRK3-212ENST00000596814 NKX2-5P52952 324 aaPredicted RBP11.64□□□□□ -0.55
VRK3-212ENST00000596814 SSBP2P81877 361 aaPredicted RBP11.64□□□□□ -0.55
VRK3-212ENST00000596814 Q71RC1 249 aaPredicted RBP11.64□□□□□ -0.55
VRK3-212ENST00000596814 ZNF546Q86UE3 836 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 GSX1Q9H4S2 264 aaPredicted RBP11.64□□□□□ -0.55
VRK3-212ENST00000596814 WSB1Q9Y6I7 421 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 ZFHX3Q15911 3703 aa11.64□□□□□ -0.55
VRK3-212ENST00000596814 ANK3Q12955 4377 aaKnown RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 HMSDA8MTL9 139 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 E7EUB6 86 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 GPR137BO60478 399 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 TMEM50AO95807 157 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 RPL23AP62750 156 aaKnown RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 TMEM65Q6PI78 240 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 RBMS3Q6XE24 437 aaKnown RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 SRSF12Q8WXF0 261 aaKnown RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 HIPK2Q9H2X6 1198 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 TNFRSF19Q9NS68 423 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 TNFSF18Q9UNG2 199 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 A0A1W2PN81 502 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 CGB1A6NKQ9 187 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 H3BP45 60 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 LY86O95711 162 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 CHRNA7P36544 502 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 VDAC2P45880 294 aaPredicted RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 P2RY1P47900 373 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 CAV2P51636 162 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 PAX9P55771 341 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 TAS2R30P59541 319 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 FXYD3Q14802 87 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 ZNF562Q6V9R5 426 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 INO80EQ8NBZ0 244 aaPredicted RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 ARPC1AQ92747 370 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 SMIM8Q96KF7 97 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 HEYLQ9NQ87 328 aaPredicted RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 LYRM2Q9NU23 88 aaPredicted RBP11.63□□□□□ -0.55
VRK3-212ENST00000596814 PSENENQ9NZ42 101 aa11.63□□□□□ -0.55
VRK3-212ENST00000596814 MTORP42345 2549 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 IGHV7-81A0A0B4J1V7 117 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 A0A1B0GW64 132 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 KCNAB3O43448 404 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 TSC22D2O75157 780 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 NUP62P37198 522 aaPredicted RBP11.62□□□□□ -0.55
VRK3-212ENST00000596814 CX3CL1P78423 397 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 NDPQ00604 133 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 MRPL41Q8IXM3 137 aaKnown RBP11.62□□□□□ -0.55
VRK3-212ENST00000596814 OR2C3Q8N628 320 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 TMEM86BQ8N661 226 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 OR10W1Q8NGF6 305 aa11.62□□□□□ -0.55
VRK3-212ENST00000596814 F8P00451 2351 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 MSGN1A6NI15 193 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 SH2D7A6NKC9 451 aaPredicted RBP11.61□□□□□ -0.55
VRK3-212ENST00000596814 INAFM1C9JVW0 142 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 AMY1AP04745 511 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 SPANXN5Q5MJ07 72 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 ABHD5Q8WTS1 349 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 HSPB9Q9BQS6 159 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 MFFQ9GZY8 342 aa11.61□□□□□ -0.55
VRK3-212ENST00000596814 RNF222A6NCQ9 220 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 FAM24AA6NFZ4 105 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 TEX22C9J3V5 150 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 INS-IGF2F8WCM5 200 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 RPL12P30050 165 aaKnown RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 ERHP84090 104 aaKnown RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 ACOT7LQ6ZUV0 252 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 AQP10Q96PS8 301 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 FAM103A1Q9BTL3 118 aaKnown RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 SLC25A31Q9H0C2 315 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 ZC4H2Q9NQZ6 224 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 IGLC7A0M8Q6 106 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 IGSF23A1L1A6 192 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 HKR1P10072 659 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 AP2S1P53680 142 aaPredicted RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 RPP30P78346 268 aaKnown RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 WT1-ASQ06250 92 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 HSD17B13Q7Z5P4 300 aaPredicted RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 C9orf62Q8N4C0 152 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 SLC24A4Q8NFF2 622 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 OR4C12Q96R67 309 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 SRSF8Q9BRL6 282 aaKnown RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 PARP11Q9NR21 331 aa11.6□□□□□ -0.55
VRK3-212ENST00000596814 STRAPQ9Y3F4 350 aaKnown RBP11.6□□□□□ -0.55
VRK3-212ENST00000596814 DNAJC9-AS1A6NH13 148 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 IFNA10P01566 189 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 APELAP0DMC3 54 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 OR13C7P0DN81 318 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 CXCL2P19875 107 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 EWSR1Q01844 656 aaKnown RBP eCLIP11.59□□□□□ -0.55
VRK3-212ENST00000596814 TMEM267Q0VDI3 215 aaPredicted RBP11.59□□□□□ -0.55
VRK3-212ENST00000596814 OR2F1Q13607 317 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 ZNF345Q14585 488 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 C9orf152Q5JTZ5 239 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 STX12Q86Y82 276 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 TMEM252Q8N6L7 170 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 DUX5Q96PT3 197 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 PAIP2BQ9ULR5 123 aaKnown RBP11.59□□□□□ -0.55
VRK3-212ENST00000596814 U3KQ87 197 aa11.59□□□□□ -0.55
VRK3-212ENST00000596814 NSD1Q96L73 2696 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms