RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 DPM3Q9P2X0 92 aa11.46□□□□□ -0.57
LIG3-205ENST00000585941 DOPEY1Q5JWR5 2465 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 CTXND1A0A1B0GTU2 59 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 A0A1B0GV50 99 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 C9JQL5 133 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 CYB5BO43169 146 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 IFNA1P01562 189 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 HSPB1P04792 205 aaKnown RBP11.46□□□□□ -0.58
LIG3-205ENST00000585941 SUB1P53999 127 aaKnown RBP eCLIP11.46□□□□□ -0.58
LIG3-205ENST00000585941 GUCA2BQ16661 112 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 KHDC3LQ587J8 217 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 ACSM6Q6P461 480 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 TREML4Q6UXN2 200 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 OR10G4Q8NGN3 311 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 OR10G9Q8NGN4 311 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 OR10G7Q8NGN6 311 aa11.46□□□□□ -0.58
LIG3-205ENST00000585941 ZNF430Q9H8G1 570 aaPredicted RBP11.46□□□□□ -0.58
LIG3-205ENST00000585941 MAP1LC3B2A6NCE7 125 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 SLC25A17O43808 307 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 NDUFS7O75251 213 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 MYOD1P15172 320 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 TAGLN2P37802 199 aaKnown RBP11.45□□□□□ -0.58
LIG3-205ENST00000585941 BTN1A1Q13410 526 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 ZNF726P1Q15940 193 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 TPTE2P1Q5T6R2 138 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 TEPPQ6URK8 271 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 RPP25LQ8N5L8 163 aaKnown RBP11.45□□□□□ -0.58
LIG3-205ENST00000585941 CLDND2Q8NHS1 167 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 MAP1LC3BQ9GZQ8 125 aa11.45□□□□□ -0.58
LIG3-205ENST00000585941 LSM4Q9Y4Z0 139 aaKnown RBP11.45□□□□□ -0.58
LIG3-205ENST00000585941 ODF3BA8MYP8 253 aa11.44□□□□□ -0.58
LIG3-205ENST00000585941 OOSP1A8MZH6 123 aa11.44□□□□□ -0.58
LIG3-205ENST00000585941 RNASE2P10153 161 aaKnown RBP11.44□□□□□ -0.58
LIG3-205ENST00000585941 PDLIM4P50479 330 aa11.44□□□□□ -0.58
LIG3-205ENST00000585941 LCN15Q6UWW0 184 aa11.44□□□□□ -0.58
LIG3-205ENST00000585941 RBMS3Q6XE24 437 aaKnown RBP11.44□□□□□ -0.58
LIG3-205ENST00000585941 IGFBPL1Q8WX77 278 aa11.44□□□□□ -0.58
LIG3-205ENST00000585941 CACNG8Q8WXS5 425 aa11.44□□□□□ -0.58
LIG3-205ENST00000585941 A0A1W2PPI3 338 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 ACTL6BO94805 426 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 OPN1MWP04001 364 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 OPN1MW2P0DN77 364 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 OPN1MW3P0DN78 364 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 GPX4P36969 197 aaPredicted RBP11.43□□□□□ -0.58
LIG3-205ENST00000585941 PRSS8Q16651 343 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 ARSJQ5FYB0 599 aaPredicted RBP11.43□□□□□ -0.58
LIG3-205ENST00000585941 ATRAIDQ6UW56 229 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 RNASEH2CQ8TDP1 164 aaKnown RBP11.43□□□□□ -0.58
LIG3-205ENST00000585941 SIRT7Q9NRC8 400 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 DCHS2Q6V1P9 2916 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 IGHV3-72A0A0B4J1Y9 119 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 LOC102723971A0A1B0GUV8 181 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 SEC14L6B5MCN3 397 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 NDUFS6O75380 124 aaKnown RBP11.43□□□□□ -0.58
LIG3-205ENST00000585941 CRYGBP07316 175 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 DLX1P56177 255 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 ICAM4Q14773 271 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 PSG5Q15238 335 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 HAGHQ16775 308 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 SOHLH1Q5JUK2 328 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 MINOS1Q5TGZ0 78 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 CCDC144NLQ6NUI1 221 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 TMEM144Q7Z5S9 345 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 RARRES2Q99969 163 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 GGTLC1Q9BX51 225 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 GNG13Q9P2W3 67 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 SIGLEC9Q9Y336 463 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 MINOS1-NBL1R4GNA1 71 aa11.43□□□□□ -0.58
LIG3-205ENST00000585941 FOXH1O75593 365 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 TSPAN9O75954 239 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 IGKV1D-33P01593 117 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 IGKV1-33P01594 117 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 BCL2P10415 239 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 RPL29P47914 159 aaKnown RBP11.42□□□□□ -0.58
LIG3-205ENST00000585941 HABP2Q14520 560 aaPredicted RBP11.42□□□□□ -0.58
LIG3-205ENST00000585941 TMEM249Q2WGJ8 235 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 OR10W1Q8NGF6 305 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 P2RX4Q99571 388 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 CCL19Q99731 98 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 MGST2Q99735 147 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 PXMP4Q9Y6I8 212 aa11.42□□□□□ -0.58
LIG3-205ENST00000585941 IGHV2-70DA0A0C4DH43 119 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 A0A1W2PPV4 95 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 NDUFS8O00217 210 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 SRP19P09132 144 aaKnown RBP11.41□□□□□ -0.58
LIG3-205ENST00000585941 ZFP36P26651 326 aaKnown RBP11.41□□□□□ -0.58
LIG3-205ENST00000585941 RPL27AP46776 148 aaKnown RBP11.41□□□□□ -0.58
LIG3-205ENST00000585941 CDC34P49427 236 aaPredicted RBP11.41□□□□□ -0.58
LIG3-205ENST00000585941 LMO4P61968 165 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 PAX2Q02962 417 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 CD69Q07108 199 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 HNF4GQ14541 408 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 HCP5Q6MZN7 132 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 FAM122CQ6P4D5 195 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 SSX7Q7RTT5 188 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 VMO1Q7Z5L0 202 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 PPP1R27Q86WC6 154 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 CLRN3Q8NCR9 226 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 RAB24Q969Q5 203 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 RITA1Q96K30 269 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms