RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TAAR5O14804 337 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 ARPC5O15511 151 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 CNIH1O95406 144 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 CA2P00918 260 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 RPL12P30050 165 aaKnown RBP12.14□□□□□ -0.47
SS18-215ENST00000580642 SUB1P53999 127 aaKnown RBP eCLIP12.14□□□□□ -0.47
SS18-215ENST00000580642 PJVKQ0ZLH3 352 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 TNXAQ16473 311 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 CLEC9AQ6UXN8 241 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 STX12Q86Y82 276 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 STPG2Q8N412 459 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 C9orf62Q8N4C0 152 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 KCNRGQ8N5I3 272 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 OR1L6Q8NGR2 347 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 ZNF580Q9UK33 172 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 STRAPQ9Y3F4 350 aaKnown RBP12.14□□□□□ -0.47
SS18-215ENST00000580642 ZANQ9Y493 2812 aa12.14□□□□□ -0.47
SS18-215ENST00000580642 OTOGQ6ZRI0 2925 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 RNF222A6NCQ9 220 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 CLDN34H7C241 214 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 FCN1O00602 326 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 KCNAB3O43448 404 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 TMEM50AO95807 157 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 HKR1P10072 659 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 CAV2P51636 162 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 CX3CL1P78423 397 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 FXYD3Q14802 87 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 BSXQ3C1V8 233 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 TMEM14EPQ6UXP3 125 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 TMEM252Q8N6L7 170 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 ZNF114Q8NC26 417 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 SRSF12Q8WXF0 261 aaKnown RBP12.13□□□□□ -0.47
SS18-215ENST00000580642 ZNF48Q96MX3 618 aaPredicted RBP12.13□□□□□ -0.47
SS18-215ENST00000580642 SOX21Q9Y651 276 aaPredicted RBP12.13□□□□□ -0.47
SS18-215ENST00000580642 TEX15Q9BXT5 2789 aa12.13□□□□□ -0.47
SS18-215ENST00000580642 NXPH3O95157 252 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 IGHV4-59P01825 116 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 IAPPP10997 89 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 S100A11P31949 105 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 SNCAP37840 140 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 SULT1A1P50225 295 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 RPL15P61313 204 aaKnown RBP12.12□□□□□ -0.47
SS18-215ENST00000580642 RAB11AP62491 216 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 HBG1P69891 147 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 HBG2P69892 147 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 SSBP2P81877 361 aaPredicted RBP12.12□□□□□ -0.47
SS18-215ENST00000580642 LGALSLQ3ZCW2 172 aaPredicted RBP12.12□□□□□ -0.47
SS18-215ENST00000580642 FBLN7Q53RD9 439 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 C2orf83Q53S99 150 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 SLC24A4Q8NFF2 622 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 ARPC1AQ92747 370 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 GGACTQ9BVM4 153 aa12.12□□□□□ -0.47
SS18-215ENST00000580642 IGHV7-81A0A0B4J1V7 117 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 MDFIC2A0A1B0GVS7 189 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 IGLC7A0M8Q6 106 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 CGB1A6NKQ9 187 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 CYB5BO43169 146 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 SRD5A1P18405 259 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 CRIP2P52943 208 aaPredicted RBP12.11□□□□□ -0.47
SS18-215ENST00000580642 EWSR1Q01844 656 aaKnown RBP eCLIP12.11□□□□□ -0.47
SS18-215ENST00000580642 SPANXN5Q5MJ07 72 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 PVRIGQ6DKI7 326 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 LAMTOR1Q6IAA8 161 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 C22orf15Q8WYQ4 148 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 PINX1Q96BK5 328 aaKnown RBP12.11□□□□□ -0.47
SS18-215ENST00000580642 RBMXL1Q96E39 390 aaKnown RBP12.11□□□□□ -0.47
SS18-215ENST00000580642 HINT2Q9BX68 163 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 ZC4H2Q9NQZ6 224 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 HSPB11Q9Y547 144 aa12.11□□□□□ -0.47
SS18-215ENST00000580642 MSGN1A6NI15 193 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 TEX22C9J3V5 150 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 CORTO00230 105 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 IFNA10P01566 189 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 IGHG2P01859 326 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 AMY1AP04745 511 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 CRYGCP07315 174 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 CXCL2P19875 107 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 NPY1RP25929 384 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 AP2S1P53680 142 aaPredicted RBP12.1□□□□□ -0.47
SS18-215ENST00000580642 GNB1P62873 340 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 TMEM267Q0VDI3 215 aaPredicted RBP12.1□□□□□ -0.47
SS18-215ENST00000580642 ATP6V1FQ16864 119 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 TMUB2Q71RG4 321 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 TMEM219Q86XT9 240 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 SIGLECL1Q8N7X8 197 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 SGMS2Q8NHU3 365 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 GRPEL2Q8TAA5 225 aa12.1□□□□□ -0.47
SS18-215ENST00000580642 RNASEH2CQ8TDP1 164 aaKnown RBP12.1□□□□□ -0.47
SS18-215ENST00000580642 ZNF469Q96JG9 3925 aaPredicted RBP12.09□□□□□ -0.47
SS18-215ENST00000580642 KANTRA0A1W2PQU2 76 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 IGSF23A1L1A6 192 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 FAM24AA6NFZ4 105 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 C15orf62A8K5M9 175 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 NPIPB5A8MRT5 1133 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 FNDC10F2Z333 226 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 HOXA3O43365 443 aaPredicted RBP12.09□□□□□ -0.47
SS18-215ENST00000580642 DFFBO76075 338 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 OPN1MWP04001 364 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 IGF1P05019 195 aa12.09□□□□□ -0.47
SS18-215ENST00000580642 OPN1MW2P0DN77 364 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms