RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RHOBP62745 196 aa18.64■□□□□ 0.58
VPS53-211ENST00000571805 SLC25A48Q6ZT89 311 aaKnown RBP18.64■□□□□ 0.58
VPS53-211ENST00000571805 SFRP2Q96HF1 295 aa18.64■□□□□ 0.58
VPS53-211ENST00000571805 IGFBP2P18065 325 aa18.64■□□□□ 0.57
VPS53-211ENST00000571805 PRNDQ9UKY0 176 aa18.64■□□□□ 0.57
VPS53-211ENST00000571805 YLPM1P49750 1951 aaKnown RBP18.64■□□□□ 0.57
VPS53-211ENST00000571805 SRRM4A7MD48 611 aaKnown RBP18.63■□□□□ 0.57
VPS53-211ENST00000571805 FNDC10F2Z333 226 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 FOXH1O75593 365 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 LINC00869P0C866 280 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 JOSD1Q15040 202 aaPredicted RBP18.63■□□□□ 0.57
VPS53-211ENST00000571805 TEX36Q5VZQ5 186 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 OR5R1Q8NH85 324 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 HINT2Q9BX68 163 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 ZNF257Q9Y2Q1 563 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 UPK2O00526 184 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 IGKV1-16P04430 117 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 TNFSF4P23510 183 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 RAB31Q13636 194 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 OCC1Q8TAD7 63 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 ZNRD1Q9P1U0 126 aa18.63■□□□□ 0.57
VPS53-211ENST00000571805 J3QR06 171 aa18.62■□□□□ 0.57
VPS53-211ENST00000571805 GATCO43716 136 aaKnown RBP18.62■□□□□ 0.57
VPS53-211ENST00000571805 PRCDQ00LT1 54 aa18.62■□□□□ 0.57
VPS53-211ENST00000571805 TMEM30BQ3MIR4 351 aa18.62■□□□□ 0.57
VPS53-211ENST00000571805 TNCP24821 2201 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 A0A0U1RQK1 487 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 ZNF320A2RRD8 509 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 CRYABP02511 175 aaKnown RBP18.61■□□□□ 0.57
VPS53-211ENST00000571805 GZMBP10144 247 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 FAM57AQ8TBR7 257 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 MGAQ8IWI9 3026 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 ZNF318Q5VUA4 2279 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 CCKARP32238 428 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 NUP37Q8NFH4 326 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 SGMS2Q8NHU3 365 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 SLC35D1Q9NTN3 355 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 ELOVL5Q9NYP7 299 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 SLC45A2Q9UMX9 530 aa18.61■□□□□ 0.57
VPS53-211ENST00000571805 MDFIC2A0A1B0GVS7 189 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 C11orf52Q96A22 123 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 BTF3L4Q96K17 158 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 CHODLQ9H9P2 273 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 PLEKHA3Q9HB20 300 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 TEX50A0A1B0GTY4 177 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 PKIAP61925 76 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 RPL31P62899 125 aaKnown RBP18.6■□□□□ 0.57
VPS53-211ENST00000571805 OR4P4Q8NGL7 312 aa18.6■□□□□ 0.57
VPS53-211ENST00000571805 IRF2P14316 349 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 RTL8BQ17RB0 113 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 TEX38Q6PEX7 206 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 MOB3BQ86TA1 216 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 FAM122AQ96E09 287 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 hADV38S2A0JD32 116 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 GPX4P36969 197 aaPredicted RBP18.59■□□□□ 0.57
VPS53-211ENST00000571805 CNN1P51911 297 aaKnown RBP18.59■□□□□ 0.57
VPS53-211ENST00000571805 MIR17HGQ75NE6 70 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 TRAPPC1Q9Y5R8 145 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 LINC00312Q9Y6C7 94 aa18.59■□□□□ 0.57
VPS53-211ENST00000571805 RP1L1Q8IWN7 2480 aaPredicted RBP18.58■□□□□ 0.57
VPS53-211ENST00000571805 IGKV1OR2-108A0A075B7D4 117 aa18.58■□□□□ 0.56
VPS53-211ENST00000571805 CCL8P80075 99 aa18.58■□□□□ 0.56
VPS53-211ENST00000571805 DEFA6Q01524 100 aa18.58■□□□□ 0.56
VPS53-211ENST00000571805 KRTCAP3Q53RY4 240 aa18.58■□□□□ 0.56
VPS53-211ENST00000571805 TP53TG5Q9Y2B4 290 aa18.58■□□□□ 0.56
VPS53-211ENST00000571805 ZNF292O60281 2723 aa18.58■□□□□ 0.56
VPS53-211ENST00000571805 K7EN84 100 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 MT-CO2P00403 227 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 HNF1AP20823 631 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 ZNF833PQ6ZTB9 187 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 OR10G8Q8NGN5 311 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 LRFN3Q9BTN0 628 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 BET1LQ9NYM9 111 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 ZMAT5Q9UDW3 170 aaKnown RBP18.57■□□□□ 0.56
VPS53-211ENST00000571805 AREGP15514 252 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 NDUFB7P17568 137 aa18.57■□□□□ 0.56
VPS53-211ENST00000571805 SLC25A10Q9UBX3 287 aaPredicted RBP18.57■□□□□ 0.56
VPS53-211ENST00000571805 SAA1P0DJI8 122 aaPredicted RBP18.56■□□□□ 0.56
VPS53-211ENST00000571805 C2orf83Q53S99 150 aa18.56■□□□□ 0.56
VPS53-211ENST00000571805 NABP2Q9BQ15 211 aa18.56■□□□□ 0.56
VPS53-211ENST00000571805 PRO1933Q9H354 126 aa18.56■□□□□ 0.56
VPS53-211ENST00000571805 SMG1Q96Q15 3661 aaKnown RBP18.56■□□□□ 0.56
VPS53-211ENST00000571805 ACTL6BO94805 426 aa18.56■□□□□ 0.56
VPS53-211ENST00000571805 RND1Q92730 232 aa18.56■□□□□ 0.56
VPS53-211ENST00000571805 AKAP13Q12802 2813 aa18.56■□□□□ 0.56
VPS53-211ENST00000571805 CUL9Q8IWT3 2517 aa18.56■□□□□ 0.56
VPS53-211ENST00000571805 C9JCJ5 164 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 FCN3O75636 299 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 PAX1P15863 534 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 TMEM108Q6UXF1 575 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 C14orf144Q96I85 54 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 UHRF2Q96PU4 802 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 FKBP11Q9NYL4 201 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 ATP5IP56385 69 aaPredicted RBP18.55■□□□□ 0.56
VPS53-211ENST00000571805 HLA-DRB5Q30154 266 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 ZCCHC24Q8N2G6 241 aaKnown RBP18.55■□□□□ 0.56
VPS53-211ENST00000571805 LY96Q9Y6Y9 160 aa18.55■□□□□ 0.56
VPS53-211ENST00000571805 GCGP01275 180 aa18.54■□□□□ 0.56
VPS53-211ENST00000571805 OR4A8P0C604 315 aa18.54■□□□□ 0.56
VPS53-211ENST00000571805 RNASE2P10153 161 aaKnown RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms