RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	NPY1R	P25929	384 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	TALDO1	P37837	337 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	WNT4	P56705	351 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	RAB11B	Q15907	218 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	TCF24	Q7RTU0	167 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	MS4A15	Q8N5U1	240 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	OR10W1	Q8NGF6	305 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	SMPD3	Q9NY59	655 aa	Predicted RBP	11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	TAS2R8	Q9NYW2	309 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	TBC1D24	Q9ULP9	559 aa		11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	AK6	Q9Y3D8	172 aa	Known RBP	11.64	□□□□□ -0.55
CLK3-223	ENST00000568488	IGKV1D-8	A0A087WSZ0	117 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	SLC17A2	O00624	439 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	GIG44	P09565	113 aa	Predicted RBP	11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	BRWD1-AS2	P59051	145 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	RPL11	P62913	178 aa	Known RBP	11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	C2orf76	Q3KRA6	126 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	TMEM41B	Q5BJD5	291 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	FAM90A2P	Q658T7	463 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	MFSD4A	Q8N468	514 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	SCARB1	Q8WTV0	552 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	GPHA2	Q96T91	129 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	HSD17B10	Q99714	261 aa	Known RBP	11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	CENPO	Q9BU64	300 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	COMMD5	Q9GZQ3	224 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	CLEC5A	Q9NY25	188 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	OR2W1	Q9Y3N9	320 aa		11.63	□□□□□ -0.55
CLK3-223	ENST00000568488	TRAV14DV4	A0A0A6YYC5	116 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	TRAV3	A0A0B4J244	114 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	DFFB	O76075	338 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	SLC22A5	O76082	557 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	IGLV2-14	P01704	120 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	HLA-DQB1	P01920	261 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	CD74	P04233	296 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	OR13C7	P0DN81	318 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	SSX1	Q16384	188 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	FAM24B	Q8N5W8	94 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	GDPD1	Q8N9F7	314 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	FAM3D	Q96BQ1	224 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	GFI1	Q99684	422 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	MS4A6A	Q9H2W1	248 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	BET1L	Q9NYM9	111 aa		11.62	□□□□□ -0.55
CLK3-223	ENST00000568488	NUPL2	O15504	423 aa	Known RBP	11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	EIF4E	P06730	217 aa	Known RBP	11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	C4BPB	P20851	252 aa		11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	RASSF2	P50749	326 aa		11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	TIMM50	Q3ZCQ8	353 aa		11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	MORN3	Q6PF18	240 aa	Predicted RBP	11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	SRSF8	Q9BRL6	282 aa	Known RBP	11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	AIFM2	Q9BRQ8	373 aa		11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	QTRT1	Q9BXR0	403 aa	Known RBP	11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	TMEM14B	Q9NUH8	114 aa		11.61	□□□□□ -0.55
CLK3-223	ENST00000568488	IGKV1D-13	A0A0B4J2D9	117 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488		F8W735	103 aa	Predicted RBP	11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	UPK2	O00526	184 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	ST8SIA3	O43173	380 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	SERPINE2	P07093	398 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	CTSG	P08311	255 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	IGKV1-13	P0DP09	117 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	REL	Q04864	619 aa	Predicted RBP	11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	TRPT1	Q86TN4	253 aa	Known RBP	11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	NANOGP1	Q8N7R0	232 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	RAB22A	Q9UL26	194 aa		11.6	□□□□□ -0.55
CLK3-223	ENST00000568488	IGHV3-66	A0A0C4DH42	116 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	TMEM272	A0A1B0GTI8	110 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	TNFSF12	O43508	249 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	UCHL1	P09936	223 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	TRAPPC2	P0DI81	140 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	TRAPPC2B	P0DI82	140 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	SPP1	P10451	314 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	GADD45A	P24522	165 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	EIF4EBP1	Q13541	118 aa	Predicted RBP	11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	ZNF66	Q6ZN08	573 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	OR10R2	Q8NGX6	335 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	ATP6V0B	Q99437	205 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	HINT2	Q9BX68	163 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	RABAC1	Q9UI14	185 aa		11.59	□□□□□ -0.55
CLK3-223	ENST00000568488	DMBT1	Q9UGM3	2413 aa	Predicted RBP	11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	KNCN	A6PVL3	124 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	MFNG	O00587	321 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	CTXN2	P0C2S0	81 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	WT1-AS	Q06250	92 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	RNF212	Q495C1	297 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	ZFP1	Q6P2D0	407 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	AHSA2	Q719I0	299 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	SPAG16	Q8N0X2	631 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	LILRB2	Q8N423	598 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	DUSP18	Q8NEJ0	188 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	ST8SIA2	Q92186	375 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	TMEM203	Q969S6	136 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	DGCR14	Q96DF8	476 aa	Known RBP	11.58	□□□□□ -0.56
CLK3-223	ENST00000568488	OR10C1	Q96KK4	312 aa		11.58	□□□□□ -0.56
CLK3-223	ENST00000568488		K7EIM0	57 aa		11.57	□□□□□ -0.56
CLK3-223	ENST00000568488	CD5	P06127	495 aa		11.57	□□□□□ -0.56
CLK3-223	ENST00000568488	HIST1H1D	P16402	221 aa	Known RBP	11.57	□□□□□ -0.56
CLK3-223	ENST00000568488	HES5	Q5TA89	166 aa		11.57	□□□□□ -0.56
CLK3-223	ENST00000568488	UBE2U	Q5VVX9	321 aa		11.57	□□□□□ -0.56
CLK3-223	ENST00000568488		Q6ZS49	121 aa		11.57	□□□□□ -0.56
CLK3-223	ENST00000568488	CYGB	Q8WWM9	190 aa		11.57	□□□□□ -0.56
CLK3-223	ENST00000568488	ZNF414	Q96IQ9	312 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms