RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TRAV41A0A0B4J266 112 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 A0A1B0GUS0 222 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 CGB1A6NKQ9 187 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 TEX22C9J3V5 150 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 E7EUB6 86 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 INS-IGF2F8WCM5 200 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 MED6O75586 246 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 CYCSP99999 105 aaKnown RBP16.24■□□□□ 0.19
CLN3-212ENST00000564574 TNFRSF9Q07011 255 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 FCN2Q15485 313 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.24■□□□□ 0.19
CLN3-212ENST00000564574 HINT2Q9BX68 163 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 PLEKHA3Q9HB20 300 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 SERTAD4Q9NUC0 356 aa16.24■□□□□ 0.19
CLN3-212ENST00000564574 A0A1B0GW64 132 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 NKX2-1P43699 371 aaPredicted RBP16.23■□□□□ 0.19
CLN3-212ENST00000564574 ID3Q02535 119 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 ECSCRQ19T08 205 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 TMEM95Q3KNT9 176 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 UNQ5815/PRO19632Q6UWF5 114 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 LFNGQ8NES3 379 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 LINC01006Q8NI28 216 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 NMES1Q9C002 83 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 ENY2Q9NPA8 101 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 GSKIPQ9P0R6 139 aa16.23■□□□□ 0.19
CLN3-212ENST00000564574 CLPSL1A2RUU4 121 aa16.22■□□□□ 0.19
CLN3-212ENST00000564574 SIX6O95475 246 aa16.22■□□□□ 0.19
CLN3-212ENST00000564574 C19orf54Q5BKX5 351 aa16.22■□□□□ 0.19
CLN3-212ENST00000564574 ASB13Q8WXK3 278 aa16.22■□□□□ 0.19
CLN3-212ENST00000564574 NOL4LQ96MY1 436 aaPredicted RBP16.22■□□□□ 0.19
CLN3-212ENST00000564574 ZFP57Q9NU63 452 aa16.22■□□□□ 0.19
CLN3-212ENST00000564574 IGLC7A0M8Q6 106 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 HMX3A6NHT5 357 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 CEBPZOSA8MTT3 80 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 LY86O95711 162 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 HOXA1P49639 335 aaPredicted RBP16.21■□□□□ 0.19
CLN3-212ENST00000564574 H2BFSP57053 126 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 SLC35B1P78383 322 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 SRSF4Q08170 494 aaKnown RBP16.21■□□□□ 0.19
CLN3-212ENST00000564574 FOXL1Q12952 345 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 IL15RAQ13261 267 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 CXorf66Q5JRM2 361 aaPredicted RBP16.21■□□□□ 0.19
CLN3-212ENST00000564574 ASPHD1Q5U4P2 390 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 TTC9CQ8N5M4 171 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 TAF15Q92804 592 aaKnown RBP eCLIP16.21■□□□□ 0.19
CLN3-212ENST00000564574 WNT10AQ9GZT5 417 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 LINC00527Q9UJ94 153 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 WSB1Q9Y6I7 421 aa16.21■□□□□ 0.19
CLN3-212ENST00000564574 TMEM89A2RUT3 159 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 NPIPB5A8MRT5 1133 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 G3V318 75 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 WRBO00258 174 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 SYNGR2O43760 224 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 NXPH3O95157 252 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 CXCL3P19876 107 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 ERHP84090 104 aaKnown RBP16.2■□□□□ 0.18
CLN3-212ENST00000564574 OR11H7Q8NGC8 314 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 OR10W1Q8NGF6 305 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 FAM110DQ8TAY7 271 aaPredicted RBP16.2■□□□□ 0.18
CLN3-212ENST00000564574 MDFIQ99750 246 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 RBKSQ9H477 322 aa16.2■□□□□ 0.18
CLN3-212ENST00000564574 PSMB11A5LHX3 300 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 SCGB1D2O95969 90 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 CRYGCP07315 174 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 PSMB6P28072 239 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 PPIFP30405 207 aaKnown RBP16.19■□□□□ 0.18
CLN3-212ENST00000564574 CFHR3Q02985 330 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 WT1-ASQ06250 92 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 KRTAP24-1Q3LI83 254 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 SPINK9Q5DT21 86 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 OR2C3Q8N628 320 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 DTD1Q8TEA8 209 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 CIB3Q96Q77 187 aaPredicted RBP16.19■□□□□ 0.18
CLN3-212ENST00000564574 HIPK2Q9H2X6 1198 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 RNF114Q9Y508 228 aa16.19■□□□□ 0.18
CLN3-212ENST00000564574 H3BUA1 57 aa16.18■□□□□ 0.18
CLN3-212ENST00000564574 APELAP0DMC3 54 aa16.18■□□□□ 0.18
CLN3-212ENST00000564574 OR13C7P0DN81 318 aa16.18■□□□□ 0.18
CLN3-212ENST00000564574 AREGP15514 252 aa16.18■□□□□ 0.18
CLN3-212ENST00000564574 CTRB1P17538 263 aa16.18■□□□□ 0.18
CLN3-212ENST00000564574 MDKP21741 143 aaPredicted RBP16.18■□□□□ 0.18
CLN3-212ENST00000564574 CTRB2Q6GPI1 263 aa16.18■□□□□ 0.18
CLN3-212ENST00000564574 CENPVQ7Z7K6 275 aaPredicted RBP16.18■□□□□ 0.18
CLN3-212ENST00000564574 COMMD1Q8N668 190 aa16.18■□□□□ 0.18
CLN3-212ENST00000564574 ZNF436Q9C0F3 470 aaPredicted RBP16.18■□□□□ 0.18
CLN3-212ENST00000564574 HEYLQ9NQ87 328 aaPredicted RBP16.18■□□□□ 0.18
CLN3-212ENST00000564574 BRI3O95415 125 aa16.17■□□□□ 0.18
CLN3-212ENST00000564574 MBPP02686 304 aaPredicted RBP16.17■□□□□ 0.18
CLN3-212ENST00000564574 GIPP09681 153 aaPredicted RBP16.17■□□□□ 0.18
CLN3-212ENST00000564574 PROK1P58294 105 aa16.17■□□□□ 0.18
CLN3-212ENST00000564574 POLR2GP62487 172 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLN3-212ENST00000564574 KLHDC1Q8N7A1 406 aa16.17■□□□□ 0.18
CLN3-212ENST00000564574 ZNF114Q8NC26 417 aa16.17■□□□□ 0.18
CLN3-212ENST00000564574 OR1L6Q8NGR2 347 aa16.17■□□□□ 0.18
CLN3-212ENST00000564574 TMEM158Q8WZ71 300 aa16.17■□□□□ 0.18
CLN3-212ENST00000564574 MAGT1Q9H0U3 335 aa16.17■□□□□ 0.18
CLN3-212ENST00000564574 CYB5BO43169 146 aa16.16■□□□□ 0.18
CLN3-212ENST00000564574 FBXO24O75426 580 aa16.16■□□□□ 0.18
CLN3-212ENST00000564574 IGHG4P01861 327 aa16.16■□□□□ 0.18
CLN3-212ENST00000564574 RAB32Q13637 225 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms