RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 LRFN3Q9BTN0 628 aa11.09□□□□□ -0.63
CLK3-215ENST00000564353 CTDSP1Q9GZU7 261 aa11.09□□□□□ -0.63
CLK3-215ENST00000564353 SRD5A3Q9H8P0 318 aa11.09□□□□□ -0.63
CLK3-215ENST00000564353 MUC6Q6W4X9 2439 aa11.09□□□□□ -0.63
CLK3-215ENST00000564353 ZZEF1O43149 2961 aa11.09□□□□□ -0.63
CLK3-215ENST00000564353 MKRN2OSH3BPM6 223 aa11.08□□□□□ -0.63
CLK3-215ENST00000564353 TMPRSS2O15393 492 aa11.08□□□□□ -0.63
CLK3-215ENST00000564353 VDAC2P45880 294 aaPredicted RBP11.08□□□□□ -0.63
CLK3-215ENST00000564353 ZNF664Q8N3J9 261 aa11.08□□□□□ -0.63
CLK3-215ENST00000564353 IMMP2LQ96T52 175 aa11.08□□□□□ -0.63
CLK3-215ENST00000564353 CEP295Q9C0D2 2601 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 GRIFINA4D1Z8 144 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 CIDEAO60543 219 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 DLX1P56177 255 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 PMS2P11Q13670 270 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 VWC2Q2TAL6 325 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 LHFPL4Q7Z7J7 247 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 OR4P4Q8NGL7 312 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 GCM1Q9NP62 436 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 JPT1Q9UK76 154 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 IL3RAP26951 378 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 TNFAIP6P98066 277 aaPredicted RBP11.08□□□□□ -0.64
CLK3-215ENST00000564353 ZADH2Q8N4Q0 377 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 STPG3Q8N7X2 389 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 C1orf162Q8NEQ5 155 aaPredicted RBP11.08□□□□□ -0.64
CLK3-215ENST00000564353 OR10W1Q8NGF6 305 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 OR1P1Q8NH06 330 aa11.08□□□□□ -0.64
CLK3-215ENST00000564353 SRRM4A7MD48 611 aaKnown RBP11.07□□□□□ -0.64
CLK3-215ENST00000564353 IL6RP08887 468 aaPredicted RBP11.07□□□□□ -0.64
CLK3-215ENST00000564353 OR10J4P0C629 311 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 OR5I1Q13606 314 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 HLA-DRB5Q30154 266 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 SGMS2Q8NHU3 365 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 CBLN4Q9NTU7 201 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 PITPNC1Q9UKF7 332 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 ASH1LQ9NR48 2969 aaKnown RBP11.07□□□□□ -0.64
CLK3-215ENST00000564353 YPEL1O60688 119 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 TDGF1P3P51864 188 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 SLC35B1P78383 322 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 YPEL2Q96QA6 119 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 NBASA2RRP1 2371 aa11.07□□□□□ -0.64
CLK3-215ENST00000564353 PTPRBP23467 1997 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 ELOA3CA0A087WX78 387 aaPredicted RBP11.06□□□□□ -0.64
CLK3-215ENST00000564353 NUPR1O60356 82 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 APELAP0DMC3 54 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 CCL3L1P16619 93 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 NPY1RP25929 384 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 PRR31Q5SQ13 230 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 MIR17HGQ75NE6 70 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 TMEM183AQ8IXX5 376 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 TMEM256Q8N2U0 113 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 SLC24A4Q8NFF2 622 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 OCC1Q8TAD7 63 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 PPP1R35Q8TAP8 253 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 APC2O95996 2303 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 CBY3A6NI87 242 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 IGHV1-46P01743 117 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 PAX1P15863 534 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 WFDC8Q8IUA0 241 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 ENY2Q9NPA8 101 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 DCHS2Q6V1P9 2916 aa11.06□□□□□ -0.64
CLK3-215ENST00000564353 F6UZH7 168 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 TM4SF5O14894 197 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 CEACAM8P31997 349 aaPredicted RBP11.05□□□□□ -0.64
CLK3-215ENST00000564353 DIAPH2-AS1Q14236 149 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 EFNB3Q15768 340 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 Q5PR19 223 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 IGFL2Q6UWQ7 119 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 OR4S2Q8NH73 311 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 ZCCHC14Q8WYQ9 949 aaKnown RBP11.05□□□□□ -0.64
CLK3-215ENST00000564353 TRGV10A0A0A0MS01 117 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 KBTBD11-OT1A0A1B0GTJ5 212 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 PRSS46E5RG02 174 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 M0R143 59 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 DVL1O14640 695 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 PLXNB1O43157 2135 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 CRYABP02511 175 aaKnown RBP11.05□□□□□ -0.64
CLK3-215ENST00000564353 GZMBP10144 247 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 RPL31P62899 125 aaKnown RBP11.05□□□□□ -0.64
CLK3-215ENST00000564353 MRPL41Q8IXM3 137 aaKnown RBP11.05□□□□□ -0.64
CLK3-215ENST00000564353 CLUHP3Q96NS8 147 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 DIRC2Q96SL1 478 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 IDI2-AS1Q9NZ38 188 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 OR51B2Q9Y5P1 312 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 TRAPPC1Q9Y5R8 145 aa11.05□□□□□ -0.64
CLK3-215ENST00000564353 PRB4P10163 310 aaPredicted RBP11.04□□□□□ -0.64
CLK3-215ENST00000564353 CBLN1P23435 193 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 TIMP3P35625 211 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 TCF15Q12870 199 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 DDB2Q92466 427 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 ZGRF1Q86YA3 2104 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 C15orf61A6NNL5 157 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 ZNF891A8MT65 544 aaPredicted RBP11.04□□□□□ -0.64
CLK3-215ENST00000564353 KLK10O43240 276 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 SIAH2O43255 324 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 GLRXP35754 106 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 NHLRC2Q8NBF2 726 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 BEND2Q8NDZ0 799 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 SFRP2Q96HF1 295 aa11.04□□□□□ -0.64
CLK3-215ENST00000564353 RNF7Q9UBF6 113 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms