RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 DOLPP1Q86YN1 238 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 CNEP1R1Q8N9A8 125 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 OR51A2Q8NGJ7 313 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 MCFD2Q8NI22 146 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RNASE11Q8TAA1 199 aaKnown RBP3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RXFP4Q8TDU9 374 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 PFDN5Q99471 154 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 PRSS27Q9BQR3 290 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 Q9H521 79 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 DPM3Q9P2X0 92 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RNF7Q9UBF6 113 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 HSPB11Q9Y547 144 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 MYO15AQ9UKN7 3530 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 NCOR2Q9Y618 2525 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 EPG5Q9HCE0 2579 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 LAMA1P25391 3075 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 CFAP54Q96N23 3096 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 COL27A1Q8IZC6 1860 aaPredicted RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PTPRQQ9UMZ3 2332 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TEX50A0A1B0GTY4 177 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 A0A1B0GWA3 101 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 IRGMA1A4Y4 181 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 IGSF23A1L1A6 192 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PLAC8L1A1L4L8 177 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RFPL4AA6NLU0 287 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 CPSF4LA6NMK7 179 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PMS2P5A8MQ11 134 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF850A8MQ14 1090 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RFPL4AL1F8VTS6 287 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 G3V2T6 193 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PSPHP1O15172 72 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF253O75346 499 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TNFSF13O75888 250 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 OR2A4O95047 310 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NDUFB2O95178 105 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TTRP02766 147 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PATE4P0C8F1 98 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 COX6B1P14854 86 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RAB3AP20336 220 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PSMB2P49721 201 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 LHX2P50458 406 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 DEFA1P59665 94 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 EGFEM1PQ0D2K5 195 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 FOXF1Q12946 379 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 Q499Y3 187 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 CGB2Q6NT52 195 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 LPCAT3Q6P1A2 487 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 AAED1Q7RTV5 226 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NOTCH2NLQ7Z3S9 236 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 PRNTQ86SH4 94 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 C11orf53Q8IXP5 236 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 SLC35G3Q8N808 338 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF555Q8NEP9 628 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNRF2Q8NHG8 242 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ABHD3Q8WU67 409 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 ITLN1Q8WWA0 313 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 RNASE6Q93091 150 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 C12orf43Q96C57 262 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 OR2A7Q96R45 310 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM243Q9BU79 118 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 MRPL27Q9P0M9 148 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 GLS2Q9UI32 602 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NOP16Q9Y3C1 178 aaKnown RBP3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 NUBP2Q9Y5Y2 271 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 BPTFQ12830 3046 aa3.89□□□□□ -1.79
VPS35P1-201ENST00000563400 MAP1BP46821 2468 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 IGKV3D-15A0A087WSY6 115 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 A0A1B0GV90 55 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF98A6NK75 572 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 RIIAD1A6NNX1 92 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PDE6DO43924 150 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 SS18L1O75177 396 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 DUSP14O95147 198 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 OR5G3P0C626 314 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CHTF8P0CG12 524 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 IFI30P13284 250 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PLA2G2AP14555 144 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PRTN3P24158 256 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CD34P28906 385 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 SRP9P49458 86 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CCR6P51684 374 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 TDGF1P3P51864 188 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 RAB2AP61019 212 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 JOSD1Q15040 202 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PRR4Q16378 134 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF239Q16600 458 aaKnown RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 FBXL19-AS1Q494R0 122 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 CENPWQ5EE01 88 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 TEX36Q5VZQ5 186 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 PAMR1Q6UXH9 720 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 OR2K2Q8NGT1 345 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF420Q8TAQ5 688 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 NTN5Q8WTR8 489 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 SLC25A44Q96H78 314 aaPredicted RBP3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 C19orf24Q9BVV8 132 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 LINC00470Q9BZP3 86 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 JPT2Q9H910 190 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 POMPQ9Y244 141 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 TMEM14AQ9Y6G1 99 aa3.88□□□□□ -1.79
VPS35P1-201ENST00000563400 KMT2BQ9UMN6 2715 aaPredicted RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 217.2 ms