RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 FRMD6-AS1P0C7T7 363 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 RPL5P46777 297 aaKnown RBP11.9□□□□□ -0.5
VPS39-203ENST00000561797 MECP2P51608 486 aaKnown RBP11.9□□□□□ -0.5
VPS39-203ENST00000561797 PPP5CP53041 499 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 WT1-ASQ06250 92 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 SCGB2B2Q4G0G5 96 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 THOC7Q6I9Y2 204 aaKnown RBP11.9□□□□□ -0.5
VPS39-203ENST00000561797 SLC25A24Q6NUK1 477 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 LHFPL1Q86WI0 220 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 ARRDC1Q8N5I2 433 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 DIRAS2Q96HU8 199 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 CXorf58Q96LI9 332 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 ZC4H2Q9NQZ6 224 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 NDUFA4L2Q9NRX3 87 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 FAM212BQ9NTI7 297 aaPredicted RBP11.9□□□□□ -0.5
VPS39-203ENST00000561797 SIGLEC8Q9NYZ4 499 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 CCDC59Q9P031 241 aaKnown RBP11.9□□□□□ -0.5
VPS39-203ENST00000561797 PRNDQ9UKY0 176 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 U3KQK5 164 aa11.9□□□□□ -0.5
VPS39-203ENST00000561797 TRBV7-1A0A0A6YYK4 115 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 DBX1A6NMT0 343 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 IGKV1-39P01597 117 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 IGKV1D-39P04432 117 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 CLEC3BP05452 202 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 TBPP20226 339 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 EDN2P20800 178 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 TAS2R19P59542 299 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 IL18Q14116 193 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 LCN12Q6JVE5 192 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 STEAP1BQ6NZ63 245 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 ADAMTSL5Q6ZMM2 481 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 H2BFWTQ7Z2G1 175 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 SBSPONQ8IVN8 264 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 Q8N1Y9 231 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 GDPD1Q8N9F7 314 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 DYNLRB2Q8TF09 96 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 LSM10Q969L4 123 aaKnown RBP11.89□□□□□ -0.51
VPS39-203ENST00000561797 MRGPRFQ96AM1 343 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 SEC22AQ96IW7 307 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 BCL7BQ9BQE9 202 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 C6orf62Q9GZU0 229 aaPredicted RBP11.89□□□□□ -0.51
VPS39-203ENST00000561797 THYN1Q9P016 225 aa11.89□□□□□ -0.51
VPS39-203ENST00000561797 ZNF320A2RRD8 509 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 H3BMQ9 156 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 CYB5BO43169 146 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 CD74P04233 296 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 PTBP1P26599 531 aaKnown RBP eCLIP11.88□□□□□ -0.51
VPS39-203ENST00000561797 PIGPP57054 158 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 RND3P61587 244 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 FAAP20Q6NZ36 180 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 HSD17B13Q7Z5P4 300 aaPredicted RBP11.88□□□□□ -0.51
VPS39-203ENST00000561797 GPHB5Q86YW7 130 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 CADM3Q8N126 398 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 Q8N402 240 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 OR4A16Q8NH70 328 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 TERB2Q8NHR7 220 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 ZNF502Q8TBZ5 544 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 ZNF486Q96H40 463 aaPredicted RBP11.88□□□□□ -0.51
VPS39-203ENST00000561797 TMEM56Q96MV1 263 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 TSC22D3Q99576 134 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 FKBP11Q9NYL4 201 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 SELENOKQ9Y6D0 94 aa11.88□□□□□ -0.51
VPS39-203ENST00000561797 IGHV3-21A0A0B4J1V1 117 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 C2orf70A6NJV1 201 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 C15orf61A6NNL5 157 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 LGALS9O00182 355 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 IGHV4-30-4P0DP06 118 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 FOLR2P14207 255 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 GPR183P32249 361 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 MFAP2P55001 183 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 MRPS10P82664 201 aaKnown RBP11.87□□□□□ -0.51
VPS39-203ENST00000561797 FAM106AQ4KMX7 169 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 SGPP2Q8IWX5 399 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 OR13C8Q8NGS7 320 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 ZFAND1Q8TCF1 268 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 MARCH1Q8TCQ1 289 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 ISOC1Q96CN7 298 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 WWC2-AS2Q96NR7 200 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 TP53RKQ96S44 253 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 TMEM14BQ9NUH8 114 aa11.87□□□□□ -0.51
VPS39-203ENST00000561797 F11RQ9Y624 299 aaKnown RBP11.87□□□□□ -0.51
VPS39-203ENST00000561797 IGHV3-35A0A0C4DH35 117 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 C3orf85A0A1B0GTC6 90 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 SSBP1Q04837 148 aaKnown RBP11.86□□□□□ -0.51
VPS39-203ENST00000561797 IZUMO4Q1ZYL8 232 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 CD300EQ496F6 205 aaPredicted RBP11.86□□□□□ -0.51
VPS39-203ENST00000561797 PLET1Q6UQ28 207 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 GTSCR1Q86UQ5 136 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 OR5B3Q8NH48 314 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 SMIM4Q8WVI0 70 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 CACNG8Q8WXS5 425 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 COPZ2Q9P299 210 aa11.86□□□□□ -0.51
VPS39-203ENST00000561797 CBLN1P23435 193 aa11.85□□□□□ -0.51
VPS39-203ENST00000561797 MEF2DQ14814 521 aa11.85□□□□□ -0.51
VPS39-203ENST00000561797 DEFB114Q30KQ6 69 aa11.85□□□□□ -0.51
VPS39-203ENST00000561797 SP6Q3SY56 376 aa11.85□□□□□ -0.51
VPS39-203ENST00000561797 CCDC71LQ8N9Z2 235 aa11.85□□□□□ -0.51
VPS39-203ENST00000561797 OR2K2Q8NGT1 345 aa11.85□□□□□ -0.51
VPS39-203ENST00000561797 VN1R17PQ8TDU5 208 aa11.85□□□□□ -0.51
VPS39-203ENST00000561797 SLIRPQ9GZT3 109 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms