RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	NDUFB8	O95169	186 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	OR2C1	O95371	312 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	CBLN1	P23435	193 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	HRH1	P35367	487 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	DEFB114	Q30KQ6	69 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	SPSB3	Q6PJ21	355 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	PLET1	Q6UQ28	207 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	SLC38A6	Q8IZM9	456 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	CCDC140	Q96MF4	163 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	GPHA2	Q96T91	129 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	CEPT1	Q9Y6K0	416 aa		10.67	□□□□□ -0.7
TPM1-223	ENST00000560445	FAM25A	B3EWG3	89 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	FAM25C	B3EWG5	89 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	FAM25G	B3EWG6	89 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	REG1A	P05451	166 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	EIF4E	P06730	217 aa	Known RBP	10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	OR13C7	P0DN81	318 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	TBP	P20226	339 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	HAGH	Q16775	308 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	CASC10	Q5T4H9	136 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	GPX8	Q8TED1	209 aa		10.66	□□□□□ -0.7
TPM1-223	ENST00000560445	BSCL2	Q96G97	398 aa	Predicted RBP	10.66	□□□□□ -0.7
TPM1-223	ENST00000560445		E7EUB6	86 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	KRAS	P01116	189 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	CLEC3B	P05452	202 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	SERPINE2	P07093	398 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	RPA2	P15927	270 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	ZNF182	P17025	639 aa	Predicted RBP	10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	HLA-DMA	P28067	261 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	GPR183	P32249	361 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	LPAR6	P43657	344 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	UCP3	P55916	312 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	RBPMS2	Q6ZRY4	209 aa	Known RBP	10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	SNX29P2	Q8IUI4	249 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	ZNF502	Q8TBZ5	544 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	ZNF486	Q96H40	463 aa	Predicted RBP	10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	HINT2	Q9BX68	163 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	MRPL27	Q9P0M9	148 aa	Known RBP	10.65	□□□□□ -0.7
TPM1-223	ENST00000560445	OR51B2	Q9Y5P1	312 aa		10.65	□□□□□ -0.7
TPM1-223	ENST00000560445		A0A1B0GW64	132 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	IZUMO1R	A6ND01	250 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	OR11H12	B2RN74	326 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	TGOLN2	O43493	480 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	HPGDS	O60760	199 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	IGHV3-23	P01764	117 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	HLA-A	P01891	365 aa	Known RBP	10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	ELK1	P19419	428 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	GPR107	Q5VW38	600 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	LAMTOR1	Q6IAA8	161 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	SLC25A24	Q6NUK1	477 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	GPR141	Q7Z602	305 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	LYSMD2	Q8IV50	215 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	OR52B4	Q8NGK2	314 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	FCAMR	Q8WWV6	532 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	MRPS26	Q9BYN8	205 aa	Known RBP	10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	FXYD6	Q9H0Q3	95 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	PLEKHA3	Q9HB20	300 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	DAZ1	Q9NQZ3	744 aa	Known RBP	10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	DMRT1	Q9Y5R6	373 aa		10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	F11R	Q9Y624	299 aa	Known RBP	10.64	□□□□□ -0.71
TPM1-223	ENST00000560445	TEX50	A0A1B0GTY4	177 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	TMEM213	A2RRL7	107 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	MFSD2B	A6NFX1	497 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	CGB1	A6NKQ9	187 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	C15orf61	A6NNL5	157 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	GABARAP	O95166	117 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	BMI1	P35226	326 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	REL	Q04864	619 aa	Predicted RBP	10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	RNASE10	Q5GAN6	216 aa	Known RBP	10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	H2BFWT	Q7Z2G1	175 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	ARRDC1	Q8N5I2	433 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	UXS1	Q8NBZ7	420 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	OR4A16	Q8NH70	328 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	SRD5A3	Q9H8P0	318 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	NDUFA4L2	Q9NRX3	87 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	C21orf62	Q9NYP8	219 aa		10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	KMT2C	Q8NEZ4	4911 aa	Known RBP	10.63	□□□□□ -0.71
TPM1-223	ENST00000560445	TRAV3	A0A0B4J244	114 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	ZNF785	A8K8V0	405 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	NDUFA4	O00483	81 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	SCGB2A1	O75556	95 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	B3GALNT1	O75752	331 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	G6PC	P35575	357 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	CTF1	Q16619	201 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	PHLDA2	Q53GA4	152 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	C19orf35	Q6ZS72	473 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	TMEM61	Q8N0U2	210 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	OR1P1	Q8NH06	330 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	TMEM190	Q8WZ59	177 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	SPAG8	Q99932	426 aa	Predicted RBP	10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	ZNF436	Q9C0F3	470 aa	Predicted RBP	10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	C5orf66	Q9H5L9	145 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	TMEM14B	Q9NUH8	114 aa		10.62	□□□□□ -0.71
TPM1-223	ENST00000560445	NUPL2	O15504	423 aa	Known RBP	10.61	□□□□□ -0.71
TPM1-223	ENST00000560445	SMIM18	P0DKX4	95 aa		10.61	□□□□□ -0.71
TPM1-223	ENST00000560445	MRPS10	P82664	201 aa	Known RBP	10.61	□□□□□ -0.71
TPM1-223	ENST00000560445	ERH	P84090	104 aa	Known RBP	10.61	□□□□□ -0.71
TPM1-223	ENST00000560445	WT1-AS	Q06250	92 aa		10.61	□□□□□ -0.71
TPM1-223	ENST00000560445	BTNL8	Q6UX41	500 aa		10.61	□□□□□ -0.71
TPM1-223	ENST00000560445	ADAMTSL5	Q6ZMM2	481 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms