RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 CCDC140Q96MF4 163 aa9.49□□□□□ -0.89
SNX1-209ENST00000559961 HIPK2Q9H2X6 1198 aa9.49□□□□□ -0.89
SNX1-209ENST00000559961 PRNDQ9UKY0 176 aa9.49□□□□□ -0.89
SNX1-209ENST00000559961 OR51B2Q9Y5P1 312 aa9.49□□□□□ -0.89
SNX1-209ENST00000559961 LOC102724200A0A096LPH7 203 aaPredicted RBP9.48□□□□□ -0.89
SNX1-209ENST00000559961 LCE6AA0A183 80 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 A8MWP6 167 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 TGOLN2O43493 480 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 PGLYRP1O75594 196 aaPredicted RBP9.48□□□□□ -0.89
SNX1-209ENST00000559961 SCAF4O95104 1147 aaKnown RBP9.48□□□□□ -0.89
SNX1-209ENST00000559961 TNFAIP8O95379 198 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 KRASP01116 189 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 SERPINE2P07093 398 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 GNRHRP30968 328 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 TAS2R20P59543 309 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 LSM3P62310 102 aaKnown RBP9.48□□□□□ -0.89
SNX1-209ENST00000559961 TM4SF20Q53R12 229 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 SPSB3Q6PJ21 355 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 ADAMTSL5Q6ZMM2 481 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 GDPD1Q8N9F7 314 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 OR4A16Q8NH70 328 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 ZNF502Q8TBZ5 544 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 LSM10Q969L4 123 aaKnown RBP9.48□□□□□ -0.89
SNX1-209ENST00000559961 MOB3AQ96BX8 217 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 BSCL2Q96G97 398 aaPredicted RBP9.48□□□□□ -0.89
SNX1-209ENST00000559961 GGTLC1Q9BX51 225 aa9.48□□□□□ -0.89
SNX1-209ENST00000559961 TRAV3A0A0B4J244 114 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 TEX50A0A1B0GTY4 177 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 IGLC7A0M8Q6 106 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 MFSD2BA6NFX1 497 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 RPS19P39019 145 aaKnown RBP9.47□□□□□ -0.89
SNX1-209ENST00000559961 APOC4P55056 127 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 KLK9Q2XQG4 91 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 Q56UQ5 140 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 BTNL8Q6UX41 500 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 TMEM61Q8N0U2 210 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 OR2C3Q8N628 320 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 UBAC2Q8NBM4 344 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 CACNG8Q8WXS5 425 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 FAM110AQ9BQ89 295 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 C20orf24Q9BUV8 137 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 C6orf62Q9GZU0 229 aaPredicted RBP9.47□□□□□ -0.89
SNX1-209ENST00000559961 COMMD3Q9UBI1 195 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 KLK9Q9UKQ9 250 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 DMRT1Q9Y5R6 373 aa9.47□□□□□ -0.89
SNX1-209ENST00000559961 IGHV3-35A0A0C4DH35 117 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 A0A1B0GW64 132 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 TMEM213A2RRL7 107 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 RBMY1BA6NDE4 496 aaKnown RBP9.46□□□□□ -0.9
SNX1-209ENST00000559961 RBMY1EA6NEQ0 496 aaKnown RBP9.46□□□□□ -0.9
SNX1-209ENST00000559961 OR2T8A6NH00 312 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 RBMY1DP0C7P1 496 aaKnown RBP9.46□□□□□ -0.9
SNX1-209ENST00000559961 HLA-DMAP28067 261 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 G6PCP35575 357 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 RELQ04864 619 aaPredicted RBP9.46□□□□□ -0.9
SNX1-209ENST00000559961 MZT2AQ6P582 158 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 LINC00322Q6ZN03 302 aaPredicted RBP9.46□□□□□ -0.9
SNX1-209ENST00000559961 H2BFWTQ7Z2G1 175 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 CADM3Q8N126 398 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 OR10W1Q8NGF6 305 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 OR5B3Q8NH48 314 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 CMTM3Q96MX0 182 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 ATP6V0BQ99437 205 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 SPAG8Q99932 426 aaPredicted RBP9.46□□□□□ -0.9
SNX1-209ENST00000559961 C5orf66Q9H5L9 145 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 SCPEP1Q9HB40 452 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 RETNQ9HD89 108 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 DAZ1Q9NQZ3 744 aaKnown RBP9.46□□□□□ -0.9
SNX1-209ENST00000559961 C21orf62Q9NYP8 219 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 MLXQ9UH92 298 aa9.46□□□□□ -0.9
SNX1-209ENST00000559961 OR4C46A6NHA9 309 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 NDUFA4O00483 81 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 NUPL2O15504 423 aaKnown RBP9.45□□□□□ -0.9
SNX1-209ENST00000559961 ATG12O94817 140 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 APOA1P02647 267 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 BMI1P35226 326 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 HRH1P35367 487 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 CMC4P56277 68 aaPredicted RBP9.45□□□□□ -0.9
SNX1-209ENST00000559961 PHLDA2Q53GA4 152 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 FCAMRQ8WWV6 532 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 SLC25A46Q96AG3 418 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 NDUFA4L2Q9NRX3 87 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 F11RQ9Y624 299 aaKnown RBP9.45□□□□□ -0.9
SNX1-209ENST00000559961 SELENOKQ9Y6D0 94 aa9.45□□□□□ -0.9
SNX1-209ENST00000559961 FAM25AB3EWG3 89 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 FAM25CB3EWG5 89 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 FAM25GB3EWG6 89 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 YIF1AO95070 293 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 EIF4EP06730 217 aaKnown RBP9.44□□□□□ -0.9
SNX1-209ENST00000559961 C8orf88P0DMB2 117 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 NAT1P18440 290 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 RCVRNP35243 200 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 ERHP84090 104 aaKnown RBP9.44□□□□□ -0.9
SNX1-209ENST00000559961 SNX29P2Q8IUI4 249 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 AP3S1Q92572 193 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 ZNF436Q9C0F3 470 aaPredicted RBP9.44□□□□□ -0.9
SNX1-209ENST00000559961 WFDC10AQ9H1F0 79 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 FAM212BQ9NTI7 297 aaPredicted RBP9.44□□□□□ -0.9
SNX1-209ENST00000559961 NSG2Q9Y328 171 aa9.44□□□□□ -0.9
SNX1-209ENST00000559961 IGHV3-21A0A0B4J1V1 117 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms