RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PRSS46E5RG02 174 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 YIF1AO95070 293 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 HRASP01112 189 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 IGHV3-48P01763 117 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 NPY1RP25929 384 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 APOBEC3AP31941 199 aaPredicted RBP8.65□□□□□ -1.02
CUX1-217ENST00000558836 CDC34P49427 236 aaPredicted RBP8.65□□□□□ -1.02
CUX1-217ENST00000558836 RAB5BP61020 215 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 CLEC12BQ2HXU8 276 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 Q8WTZ3 238 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 RITA1Q96K30 269 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 HARBI1Q96MB7 349 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 C17orf112F2Z3M2 114 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 ITGB1BP1O14713 200 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 GATA2P23769 480 aaPredicted RBP8.65□□□□□ -1.02
CUX1-217ENST00000558836 LOXP28300 417 aaPredicted RBP8.65□□□□□ -1.02
CUX1-217ENST00000558836 CASP6P55212 293 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 LY6DQ14210 128 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 RTL8BQ17RB0 113 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 MUC15Q8N387 334 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.65□□□□□ -1.02
CUX1-217ENST00000558836 OR52E5Q8NH55 327 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 SMIM7Q9BQ49 75 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 LINC00574Q9H8X3 128 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 GAB2Q9UQC2 676 aa8.65□□□□□ -1.02
CUX1-217ENST00000558836 A0A1W2PPV4 95 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 LINC00587B1AMM8 73 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 CLN5O75503 358 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 APELAP0DMC3 54 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 PSMB3P49720 205 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 ADIRFQ15847 76 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 C10orf55Q5SWW7 151 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 CST9LP1Q5W188 147 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 WDR25Q64LD2 544 aaPredicted RBP8.64□□□□□ -1.03
CUX1-217ENST00000558836 RBMS3Q6XE24 437 aaKnown RBP8.64□□□□□ -1.03
CUX1-217ENST00000558836 TUBA4BQ9H853 241 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 FOXA2Q9Y261 457 aaPredicted RBP8.64□□□□□ -1.03
CUX1-217ENST00000558836 PXMP4Q9Y6I8 212 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 TEX50A0A1B0GTY4 177 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 FAM90A9PA6NNJ1 464 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 CYB5BO43169 146 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 ACTL6BO94805 426 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 MBP02144 154 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 CA7P43166 264 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 ELOBQ15370 118 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 ACOT6Q3I5F7 207 aaPredicted RBP8.64□□□□□ -1.03
CUX1-217ENST00000558836 SPATA31B1PQ5VZV4 182 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 SLC35E3Q7Z769 313 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 NECAP1Q8NC96 275 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 ABHD5Q8WTS1 349 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 IGFBPL1Q8WX77 278 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 GGTLC1Q9BX51 225 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 PLEKHA3Q9HB20 300 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 SEPSECSQ9HD40 501 aaKnown RBP8.64□□□□□ -1.03
CUX1-217ENST00000558836 BIN3Q9NQY0 253 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 KLF2Q9Y5W3 355 aaPredicted RBP8.64□□□□□ -1.03
CUX1-217ENST00000558836 UPK2O00526 184 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 TNFRSF13BO14836 293 aaPredicted RBP8.64□□□□□ -1.03
CUX1-217ENST00000558836 IFNA1P01562 189 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 IGFBP2P18065 325 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 ADTRPQ96IZ2 230 aa8.64□□□□□ -1.03
CUX1-217ENST00000558836 SPG11Q96JI7 2443 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 CFAP46Q8IYW2 2715 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 H0YJW9 148 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 ENSAO43768 121 aaKnown RBP8.63□□□□□ -1.03
CUX1-217ENST00000558836 KBTBD11O94819 623 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 C1QTNF9P0C862 333 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 PAX6P26367 422 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 ATP5G3P48201 142 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 MEF2CQ06413 473 aaPredicted RBP8.63□□□□□ -1.03
CUX1-217ENST00000558836 RNF212Q495C1 297 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 ZNF833PQ6ZTB9 187 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 PARLQ9H300 379 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 ARL14EPLP0DKL9 152 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 AGAP20933 346 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 NPPCP23582 126 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 ADORA2A-AS1P86434 159 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 YPEL4Q96NS1 127 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 DERL1Q9BUN8 251 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 SDF2L1Q9HCN8 221 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 NPVFQ9HCQ7 196 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 TPSG1Q9NRR2 321 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 CRYBG3Q68DQ2 2970 aa8.63□□□□□ -1.03
CUX1-217ENST00000558836 CSMD2Q7Z408 3487 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 PGPEP1LA6NFU8 196 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 B9A039 149 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 C11orf94C9JXX5 98 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 FOXH1O75593 365 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 FOLR2P14207 255 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 MEOX2P50222 304 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 STPG3Q8N7X2 389 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 FLYWCH2Q96CP2 140 aaKnown RBP8.62□□□□□ -1.03
CUX1-217ENST00000558836 REG1AP05451 166 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 IL6RP08887 468 aaPredicted RBP8.62□□□□□ -1.03
CUX1-217ENST00000558836 KLRB1Q12918 225 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 TEPPQ6URK8 271 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 C11orf42Q8N5U0 333 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 TMEM68Q96MH6 324 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 P2RX4Q99571 388 aa8.62□□□□□ -1.03
CUX1-217ENST00000558836 PRNDQ9UKY0 176 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms