RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 AHRRA9YTQ3 701 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 CSN3P07498 182 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 ACSF3Q4G176 576 aaPredicted RBP9.42□□□□□ -0.9
LDLR-208ENST00000558518 CT55Q8WUE5 264 aa9.42□□□□□ -0.9
LDLR-208ENST00000558518 EAF1Q96JC9 268 aaPredicted RBP9.42□□□□□ -0.9
LDLR-208ENST00000558518 DMXL2Q8TDJ6 3036 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 FAM90A26D6RGX4 464 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.41□□□□□ -0.9
LDLR-208ENST00000558518 MT-CO2P00403 227 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 RHOBP62745 196 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 IL11RAQ14626 422 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 EFNB3Q15768 340 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 ATP1A1-AS1Q5TC04 95 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 TMEM144Q7Z5S9 345 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 LYG1Q8N1E2 194 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 TMEM251Q8N6I4 163 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 TMEM105Q8N8V8 129 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 OR2Z1Q8NG97 314 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 WDR54Q9H977 334 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 PMS2P5A8MQ11 134 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 HYPMO75409 117 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 GPX1P07203 203 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 ZNF83P51522 516 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 RPL8P62917 257 aaKnown RBP9.41□□□□□ -0.9
LDLR-208ENST00000558518 STUMQ69YW2 141 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 BLNKQ8WV28 456 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 TTTY12Q9BZ98 90 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 ZNRD1Q9P1U0 126 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 UQCR10Q9UDW1 63 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 LOC102723996A0A087X1L8 192 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 OOEPA6NGQ2 149 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 CCL25O15444 150 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 CD46P15529 392 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 CEACAM8P31997 349 aaPredicted RBP9.41□□□□□ -0.9
LDLR-208ENST00000558518 UTF1Q5T230 341 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 IBA57Q5T440 356 aaKnown RBP9.41□□□□□ -0.9
LDLR-208ENST00000558518 DCAF12Q5T6F0 453 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 OR4B1Q8NGF8 309 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 ZNF596Q8TC21 504 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 LRRC29Q8WV35 223 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 TMEM140Q9NV12 185 aa9.41□□□□□ -0.9
LDLR-208ENST00000558518 IGHV3-21A0A0B4J1V1 117 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 TRAV5A0A0B4J249 113 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 RAB29O14966 203 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 APCSP02743 223 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 RPL19P84098 196 aaKnown RBP9.4□□□□□ -0.9
LDLR-208ENST00000558518 TEPPQ6URK8 271 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 SPEM1Q8N4L4 309 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 NANOS1Q8WY41 292 aaKnown RBP9.4□□□□□ -0.9
LDLR-208ENST00000558518 COQ2Q96H96 371 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 RNF2Q99496 336 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 WASHC3Q9Y3C0 194 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 MRPS18CQ9Y3D5 142 aaKnown RBP9.4□□□□□ -0.9
LDLR-208ENST00000558518 A0A1W2PS18 150 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 DNPH1O43598 174 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 RELQ04864 619 aaPredicted RBP9.4□□□□□ -0.9
LDLR-208ENST00000558518 RNPS1Q15287 305 aaKnown RBP9.4□□□□□ -0.9
LDLR-208ENST00000558518 FAM168AQ92567 244 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 TPPP3Q9BW30 176 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 TCF19Q9Y242 345 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 ZFP30Q9Y2G7 519 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 SIT1Q9Y3P8 196 aa9.4□□□□□ -0.9
LDLR-208ENST00000558518 CFAP47Q6ZTR5 3102 aa9.4□□□□□ -0.91
LDLR-208ENST00000558518 CA2P00918 260 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 NPY1RP25929 384 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 DUSP3P51452 185 aaPredicted RBP9.39□□□□□ -0.91
LDLR-208ENST00000558518 TEX43Q6ZNM6 134 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 ABCA4P78363 2273 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 STAG3L2P0CL84 134 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 STAG3L3P0CL85 134 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 CLDN18P56856 261 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 LEMD1Q68G75 181 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 C1orf174Q8IYL3 243 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 GMPPAQ96IJ6 420 aaPredicted RBP9.39□□□□□ -0.91
LDLR-208ENST00000558518 C20orf144Q9BQM9 153 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 SH2D2AQ9NP31 389 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 ABI3Q9P2A4 366 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 LGALS4P56470 323 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 ATMQ13315 3056 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 NPVFQ9HCQ7 196 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 ASCL3Q9NQ33 180 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 BET1LQ9NYM9 111 aa9.39□□□□□ -0.91
LDLR-208ENST00000558518 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.38□□□□□ -0.91
LDLR-208ENST00000558518 REG1BP48304 166 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 ZNF841Q6ZN19 808 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 TCTEX1D1Q8N7M0 179 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 Q8NFD4 153 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 OR2T6Q8NHC8 308 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 KLF14Q8TD94 323 aaPredicted RBP9.38□□□□□ -0.91
LDLR-208ENST00000558518 OR8B2Q96RD0 313 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 FAM173AQ9BQD7 235 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 CLEC7AQ9BXN2 247 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 PKIBQ9C010 78 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 MEOX1P50221 254 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 TNXAQ16473 311 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 CENPVQ7Z7K6 275 aaPredicted RBP9.38□□□□□ -0.91
LDLR-208ENST00000558518 LINC00596Q86U02 117 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 OR5B3Q8NH48 314 aa9.38□□□□□ -0.91
LDLR-208ENST00000558518 PARD6GQ9BYG4 376 aaPredicted RBP9.38□□□□□ -0.91
LDLR-208ENST00000558518 COL5A1P20908 1838 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms