RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 RPRMQ9NS64 109 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 WDR83OSQ9Y284 106 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 KPTNQ9Y664 436 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 TEX50A0A1B0GTY4 177 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 A0A1W2PN81 502 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 SMCO3A2RU48 225 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 RRHO14718 337 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 FOLR2P14207 255 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 CHRNA7P36544 502 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 MRPL41Q8IXM3 137 aaKnown RBP13.63□□□□□ -0.23
LDLR-206ENST00000557958 KIR3DL3Q8N743 410 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 PSMG3-AS1Q96PY0 264 aa13.63□□□□□ -0.23
LDLR-206ENST00000557958 AKAP6Q13023 2319 aa13.62□□□□□ -0.23
LDLR-206ENST00000557958 A0A1B0GV50 99 aa13.62□□□□□ -0.23
LDLR-206ENST00000557958 FNDC10F2Z333 226 aa13.62□□□□□ -0.23
LDLR-206ENST00000557958 ENSAO43768 121 aaKnown RBP13.62□□□□□ -0.23
LDLR-206ENST00000557958 MDKP21741 143 aaPredicted RBP13.62□□□□□ -0.23
LDLR-206ENST00000557958 CEACAM3P40198 252 aa13.62□□□□□ -0.23
LDLR-206ENST00000557958 ELLP55199 621 aaPredicted RBP13.62□□□□□ -0.23
LDLR-206ENST00000557958 SPSB3Q6PJ21 355 aa13.62□□□□□ -0.23
LDLR-206ENST00000557958 C1orf122Q6ZSJ8 110 aa13.62□□□□□ -0.23
LDLR-206ENST00000557958 PNKDQ8N490 385 aa13.62□□□□□ -0.23
LDLR-206ENST00000557958 IGHV1-3A0A0C4DH29 117 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 RBFOX3A6NFN3 312 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 CA2P00918 260 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 PPT1P50897 306 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 ERHP84090 104 aaKnown RBP13.61□□□□□ -0.23
LDLR-206ENST00000557958 OR11H6Q8NGC7 330 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 OR4P4Q8NGL7 312 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 MBD3L1Q8WWY6 194 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 IGFBPL1Q8WX77 278 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 RCC1LQ96I51 464 aaKnown RBP13.61□□□□□ -0.23
LDLR-206ENST00000557958 UNKLQ9H9P5 680 aaKnown RBP13.61□□□□□ -0.23
LDLR-206ENST00000557958 MALRD1Q5VYJ5 2156 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 LRRK2Q5S007 2527 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 CRYBG3Q68DQ2 2970 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 PRSS46E5RG02 174 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 INS-IGF2F8WCM5 200 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 PRTN3P24158 256 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 PDLIM4P50479 330 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 ARF6P62330 175 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 RAB31Q13636 194 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 ACOT6Q3I5F7 207 aaPredicted RBP13.61□□□□□ -0.23
LDLR-206ENST00000557958 FFAR4Q5NUL3 377 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 MOB3BQ86TA1 216 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 TEX45Q8NA69 505 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 BPESC1Q9GZL8 116 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 SLC35B3Q9H1N7 401 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 NPVFQ9HCQ7 196 aa13.61□□□□□ -0.23
LDLR-206ENST00000557958 DOCK11Q5JSL3 2073 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 ZNF98A6NK75 572 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 IGLV2-23P01705 113 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 HTR1DP28221 377 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 C2orf83Q53S99 150 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 RNF5Q99942 180 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 SMCO4Q9NRQ5 59 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 NDUFA4L2Q9NRX3 87 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 SLC39A9Q9NUM3 307 aa13.6□□□□□ -0.23
LDLR-206ENST00000557958 IFNA1P01562 189 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 IGHV2-5P01817 119 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 Q8N7P7 452 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 C15orf54Q8N8G6 183 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 RXFP4Q8TDU9 374 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 FAM168AQ92567 244 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 ACTR3CQ9C0K3 210 aaPredicted RBP13.59□□□□□ -0.23
LDLR-206ENST00000557958 VSIRQ9H7M9 311 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 MAP1LC3B2A6NCE7 125 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 CYB5BO43169 146 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 SLC25A17O43808 307 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 ACTL6BO94805 426 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 OPN1MWP04001 364 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 OPN1MW2P0DN77 364 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 OPN1MW3P0DN78 364 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 SUB1P53999 127 aaKnown RBP eCLIP13.59□□□□□ -0.23
LDLR-206ENST00000557958 TREML4Q6UXN2 200 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 MMD2Q8IY49 270 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 OR10G4Q8NGN3 311 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 OR10G9Q8NGN4 311 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 OR10G7Q8NGN6 311 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 TMEM170AQ8WVE7 144 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 SCRT1Q9BWW7 348 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 MAP1LC3BQ9GZQ8 125 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 DPM3Q9P2X0 92 aa13.59□□□□□ -0.23
LDLR-206ENST00000557958 TENM4Q6N022 2769 aa13.58□□□□□ -0.23
LDLR-206ENST00000557958 CTXND1A0A1B0GTU2 59 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 LY6LH3BQJ8 138 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 CRYBA1P05813 215 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 MYOD1P15172 320 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 MAS1LP35410 378 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 OPRK1P41145 380 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 CTAG1AP78358 180 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 CCL20P78556 96 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 ZNF506Q5JVG8 444 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 TPTE2P1Q5T6R2 138 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 TEPPQ6URK8 271 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 CLEC2AQ6UVW9 174 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 LCN15Q6UWW0 184 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 ZNF430Q9H8G1 570 aaPredicted RBP13.58□□□□□ -0.24
LDLR-206ENST00000557958 SIRT7Q9NRC8 400 aa13.58□□□□□ -0.24
LDLR-206ENST00000557958 IGHV3-72A0A0B4J1Y9 119 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms