RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 C19orf54Q5BKX5 351 aa16.67■□□□□ 0.26
CASC4-204ENST00000557945 ASPHD1Q5U4P2 390 aa16.67■□□□□ 0.26
CASC4-204ENST00000557945 GGNBP1Q5YKI7 109 aa16.67■□□□□ 0.26
CASC4-204ENST00000557945 TEX38Q6PEX7 206 aa16.67■□□□□ 0.26
CASC4-204ENST00000557945 C12orf45Q8N5I9 185 aaPredicted RBP16.67■□□□□ 0.26
CASC4-204ENST00000557945 MINDY2Q8NBR6 621 aa16.67■□□□□ 0.26
CASC4-204ENST00000557945 WIPF2Q8TF74 440 aaPredicted RBP16.67■□□□□ 0.26
CASC4-204ENST00000557945 TMEM68Q96MH6 324 aa16.67■□□□□ 0.26
CASC4-204ENST00000557945 FBXO24O75426 580 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 IFNA21P01568 189 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 CD28P10747 220 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 PPIFP30405 207 aaKnown RBP16.66■□□□□ 0.26
CASC4-204ENST00000557945 HSPE1P61604 102 aaKnown RBP16.66■□□□□ 0.26
CASC4-204ENST00000557945 SMCO1Q147U7 214 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 ZNF429Q86V71 674 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 NDUFA4L2Q9NRX3 87 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 ZNF355PQ9NSJ1 428 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 ZNF257Q9Y2Q1 563 aa16.66■□□□□ 0.26
CASC4-204ENST00000557945 IGHG4P01861 327 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 PF4V1P10720 104 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 AREGP15514 252 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 SPINK9Q5DT21 86 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 HIST2H2BDQ6DRA6 164 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 THOC7Q6I9Y2 204 aaKnown RBP16.65■□□□□ 0.26
CASC4-204ENST00000557945 COMMD1Q8N668 190 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 OR10W1Q8NGF6 305 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 OR1S1Q8NH92 325 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 ZNF747Q9BV97 191 aa16.65■□□□□ 0.26
CASC4-204ENST00000557945 A0A1B0GU03 582 aa16.64■□□□□ 0.26
CASC4-204ENST00000557945 SOX15O60248 233 aa16.64■□□□□ 0.26
CASC4-204ENST00000557945 REG1AP05451 166 aa16.64■□□□□ 0.26
CASC4-204ENST00000557945 OR5M8Q8NGP6 311 aa16.64■□□□□ 0.26
CASC4-204ENST00000557945 COA4Q9NYJ1 87 aa16.64■□□□□ 0.26
CASC4-204ENST00000557945 SNRPGP15A8MWD9 76 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 NXPH3O95157 252 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 PRCDQ00LT1 54 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 FOXE3Q13461 319 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 CXorf66Q5JRM2 361 aaPredicted RBP16.64■□□□□ 0.25
CASC4-204ENST00000557945 KHDC1LQ5JSQ8 128 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 TMEM65Q6PI78 240 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 LCNL1Q6ZST4 164 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 FAM110DQ8TAY7 271 aaPredicted RBP16.64■□□□□ 0.25
CASC4-204ENST00000557945 MS4A10Q96PG2 267 aa16.64■□□□□ 0.25
CASC4-204ENST00000557945 SRSF8Q9BRL6 282 aaKnown RBP16.64■□□□□ 0.25
CASC4-204ENST00000557945 TET2Q6N021 2002 aaPredicted RBP16.63■□□□□ 0.25
CASC4-204ENST00000557945 TCRBV4S1A1TA0A5B7 111 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 IGLC7A0M8Q6 106 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 IGLV1-40P01703 118 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 ELANEP08246 267 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 OR13C7P0DN81 318 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 TATDN3Q17R31 274 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 TCTEX1D4Q5JR98 221 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 HSD17B13Q7Z5P4 300 aaPredicted RBP16.63■□□□□ 0.25
CASC4-204ENST00000557945 MRPL41Q8IXM3 137 aaKnown RBP16.63■□□□□ 0.25
CASC4-204ENST00000557945 TTC9CQ8N5M4 171 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 PLEKHA3Q9HB20 300 aa16.63■□□□□ 0.25
CASC4-204ENST00000557945 MPTX1A8MV57 137 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 CCSO14618 274 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 SLC25A6P12236 298 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 PSMB8P28062 276 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 PSMB6P28072 239 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 HOXA1P49639 335 aaPredicted RBP16.62■□□□□ 0.25
CASC4-204ENST00000557945 SPCS3P61009 180 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 OXA1LQ15070 435 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 AARDQ4LEZ3 155 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 CITED1Q99966 193 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 CITED2Q99967 270 aaPredicted RBP16.62■□□□□ 0.25
CASC4-204ENST00000557945 KLK15Q9H2R5 256 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 ENY2Q9NPA8 101 aa16.62■□□□□ 0.25
CASC4-204ENST00000557945 C13orf42A0A1B0GVH6 325 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 NPIPB5A8MRT5 1133 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 FAM25EA8MYX2 175 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 PRH1P02810 166 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 RPLP1P05386 114 aaKnown RBP16.61■□□□□ 0.25
CASC4-204ENST00000557945 WT1-ASQ06250 92 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 SHISA2Q6UWI4 295 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 C19orf35Q6ZS72 473 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 OR52E5Q8NH55 327 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 CACFD1Q9UGQ2 172 aa16.61■□□□□ 0.25
CASC4-204ENST00000557945 CEBPZOSA8MTT3 80 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 SSNA1O43805 119 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 TRGV3P03979 118 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 DEFA4P12838 97 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 CTRB1P17538 263 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 RAB9AP51151 201 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 TPPP2P59282 170 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 CD83Q01151 205 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 CTRB2Q6GPI1 263 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 ALG5Q9Y673 324 aa16.6■□□□□ 0.25
CASC4-204ENST00000557945 A0A1W2PRX2 142 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 C5orf51A6NDU8 294 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 H3BUA1 57 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 PITX3O75364 302 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 CRYGCP07315 174 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 ERHP84090 104 aaKnown RBP16.59■□□□□ 0.25
CASC4-204ENST00000557945 TNFRSF9Q07011 255 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 IAH1Q2TAA2 248 aaPredicted RBP16.59■□□□□ 0.25
CASC4-204ENST00000557945 RNF152Q8N8N0 203 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 OR10C1Q96KK4 312 aa16.59■□□□□ 0.25
CASC4-204ENST00000557945 HSPB7Q9UBY9 170 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms