RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PLEKHA2Q9HB19 425 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 IFT46Q9NQC8 304 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 MRPL27Q9P0M9 148 aaKnown RBP8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 UFC1Q9Y3C8 167 aa8.29□□□□□ -1.08
CCDC88C-213ENST00000557455 BIRC6Q9NR09 4857 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 MEIS3P1A6NDR6 274 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 TGOLN2O43493 480 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 TMEM127O75204 238 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 FGF2P09038 288 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 TRAPPC2P0DI81 140 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 TRAPPC2BP0DI82 140 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 SMIM18P0DKX4 95 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 RPA2P15927 270 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 GNRHRP30968 328 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 ELLP55199 621 aaPredicted RBP8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 ERVK-16P61578 105 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 NEDD8Q15843 81 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 GDPD1Q8N9F7 314 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 TSPAN14Q8NG11 270 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 OR10W1Q8NGF6 305 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 VN1R17PQ8TDU5 208 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 S100A16Q96FQ6 103 aaKnown RBP8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 EHFQ9NZC4 300 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 COMMD9Q9P000 198 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 NDUFA13Q9P0J0 144 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 ALMS1Q8TCU4 4167 aa8.28□□□□□ -1.08
CCDC88C-213ENST00000557455 TEX50A0A1B0GTY4 177 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 OR2T8A6NH00 312 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 MARCH11A6NNE9 402 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 XRCC3O43542 346 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 SERPINE2P07093 398 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 OR13C7P0DN81 318 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 RPL5P46777 297 aaKnown RBP8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 SLC25A24Q6NUK1 477 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 HSD17B13Q7Z5P4 300 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 SLC38A6Q8IZM9 456 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 OR2C3Q8N628 320 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 OR1L8Q8NGR8 309 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 OVOL2Q9BRP0 275 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 ZNF2Q9BSG1 426 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 ZNF436Q9C0F3 470 aaPredicted RBP8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 C5orf66Q9H5L9 145 aa8.27□□□□□ -1.09
CCDC88C-213ENST00000557455 A0A087WXM4 84 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 SMIM31A0A1B0GVY4 71 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 PGLYRP1O75594 196 aaPredicted RBP8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 RLN1P04808 185 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 F2RP25116 425 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 RFX2P48378 723 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 WT1-ASQ06250 92 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 UBE2NLQ5JXB2 153 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 LAMTOR1Q6IAA8 161 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 DHRS11Q6UWP2 260 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 CROCCP3Q8IVE0 287 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 TMEM190Q8WZ59 177 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 LSM10Q969L4 123 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 MOB3AQ96BX8 217 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 BSCL2Q96G97 398 aaPredicted RBP8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 SPAG8Q99932 426 aaPredicted RBP8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 HINT2Q9BX68 163 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 VCX3AQ9NNX9 186 aa8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 DAZ1Q9NQZ3 744 aaKnown RBP8.26□□□□□ -1.09
CCDC88C-213ENST00000557455 IGHV3-21A0A0B4J1V1 117 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 NDUFA4O00483 81 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 TSPAN4O14817 238 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 SNAPC5O75971 98 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 KRASP01116 189 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 PMP2P02689 132 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 LPAR6P43657 344 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 APOC4P55056 127 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 TAS2R46P59540 309 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 TMEM69Q5SWH9 247 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 SPSB3Q6PJ21 355 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 CMTM1Q8IZ96 169 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 UBAC2Q8NBM4 344 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 OR5H2Q8NGV7 314 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 FCAMRQ8WWV6 532 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 DGCR14Q96DF8 476 aaKnown RBP8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 NDUFA4L2Q9NRX3 87 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 C21orf62Q9NYP8 219 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 UBQLN2Q9UHD9 624 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 NSG2Q9Y328 171 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 OR51B2Q9Y5P1 312 aa8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 F11RQ9Y624 299 aaKnown RBP8.25□□□□□ -1.09
CCDC88C-213ENST00000557455 GPR31O00270 319 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 G6PCP35575 357 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 TGFBR1P36897 503 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 MFAP2P55001 183 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 TAS2R20P59543 309 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 CADM3Q8N126 398 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 SAMD12Q8N8I0 201 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 OR6F1Q8NGZ6 308 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 SCARB1Q8WTV0 552 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 TMEM56Q96MV1 263 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 ATP6V0BQ99437 205 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 CHRDL1Q9BU40 450 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 C20orf24Q9BUV8 137 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 ANAPC10Q9UM13 185 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 TP53TG1Q9Y2A0 90 aa8.24□□□□□ -1.09
CCDC88C-213ENST00000557455 IGHV3OR16-8A0A075B7F1 116 aa8.23□□□□□ -1.09
CCDC88C-213ENST00000557455 A0A0J9YWU9 116 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms