RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 DPM3Q9P2X0 92 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 WDR83OSQ9Y284 106 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 TRAV1-1A0A0B4J248 108 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 A0A1B0GW64 132 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 AGPAT2O15120 278 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 MPDU1O75352 247 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 CA2P00918 260 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 IFNA4P05014 189 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 CEACAM3P40198 252 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 SPSB3Q6PJ21 355 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 NARS2Q96I59 477 aaKnown RBP11.86□□□□□ -0.51
VPS33B-205ENST00000556096 SCRT1Q9BWW7 348 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 HINT2Q9BX68 163 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 RPRMQ9NS64 109 aa11.86□□□□□ -0.51
VPS33B-205ENST00000556096 MAST4O15021 2626 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 NAV2Q8IVL1 2488 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 IGHV3-72A0A0B4J1Y9 119 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 IGHV2-70DA0A0C4DH43 119 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 A0A1W2PN81 502 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 A0A1W2PPI3 338 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 FNDC10F2Z333 226 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 HBE1P02100 147 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 CRYGBP07316 175 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 CHRNA7P36544 502 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 AKR1C1Q04828 323 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 BSXQ3C1V8 233 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 C2orf83Q53S99 150 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 TMEM41BQ5BJD5 291 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 RITA1Q96K30 269 aa11.85□□□□□ -0.51
VPS33B-205ENST00000556096 C17orf112F2Z3M2 114 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 SLC25A17O43808 307 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 SOX15O60248 233 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 MBP02144 154 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 RAB2AP61019 212 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 PEA15Q15121 130 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 GUK1Q16774 197 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 LDLRAD2Q5SZI1 272 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 C10orf91Q5T1B1 145 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 ZNF709Q8N972 641 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 MBD3L1Q8WWY6 194 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 PBDC1Q9BVG4 233 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 NPCDR1Q9BY65 106 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 SIRPDQ9H106 197 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 ZNF430Q9H8G1 570 aaPredicted RBP11.84□□□□□ -0.51
VPS33B-205ENST00000556096 FAM96BQ9Y3D0 163 aa11.84□□□□□ -0.51
VPS33B-205ENST00000556096 NDUFS8O00217 210 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 FOXH1O75593 365 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 OPN1MWP04001 364 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 OPN1MW2P0DN77 364 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 OPN1MW3P0DN78 364 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 LCN2P80188 198 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 ERHP84090 104 aaKnown RBP11.83□□□□□ -0.52
VPS33B-205ENST00000556096 HABP2Q14520 560 aaPredicted RBP11.83□□□□□ -0.52
VPS33B-205ENST00000556096 PSG5Q15238 335 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 MRGPRG-AS1Q2M3A8 158 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 VMO1Q7Z5L0 202 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 SMDT1Q9H4I9 107 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 TMEM231Q9H6L2 316 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 VSIRQ9H7M9 311 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 NPVFQ9HCQ7 196 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 POLR3KQ9Y2Y1 108 aaPredicted RBP11.83□□□□□ -0.52
VPS33B-205ENST00000556096 OOSP1A8MZH6 123 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 APOC3P02656 99 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 MAS1LP35410 378 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 KLRD1Q13241 179 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 MINOS1Q5TGZ0 78 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 TREML4Q6UXN2 200 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 MMD2Q8IY49 270 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 SFT2D1Q8WV19 159 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 PIMREGQ9BSJ6 248 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 SEC11CQ9BY50 192 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 KIAA1456Q9P272 454 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 CARHSP1Q9Y2V2 147 aaKnown RBP11.83□□□□□ -0.52
VPS33B-205ENST00000556096 MINOS1-NBL1R4GNA1 71 aa11.83□□□□□ -0.52
VPS33B-205ENST00000556096 ANKRD17O75179 2603 aaKnown RBP11.83□□□□□ -0.52
VPS33B-205ENST00000556096 PDZD2O15018 2839 aa11.82□□□□□ -0.52
VPS33B-205ENST00000556096 CGB1A6NKQ9 187 aa11.82□□□□□ -0.52
VPS33B-205ENST00000556096 FAM157AC9JC47 383 aa11.82□□□□□ -0.52
VPS33B-205ENST00000556096 RNASE2P10153 161 aaKnown RBP11.82□□□□□ -0.52
VPS33B-205ENST00000556096 CCL20P78556 96 aa11.82□□□□□ -0.52
VPS33B-205ENST00000556096 PRSS8Q16651 343 aa11.82□□□□□ -0.52
VPS33B-205ENST00000556096 FAM168AQ92567 244 aa11.82□□□□□ -0.52
VPS33B-205ENST00000556096 SIGLEC9Q9Y336 463 aa11.82□□□□□ -0.52
VPS33B-205ENST00000556096 VPS13CQ709C8 3753 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 E7EUB6 86 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 F8W036 122 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 TIMM23O14925 209 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 PAX1P15863 534 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 HOXB4P17483 251 aaPredicted RBP11.81□□□□□ -0.52
VPS33B-205ENST00000556096 ADCYAP1P18509 176 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 ELLP55199 621 aaPredicted RBP11.81□□□□□ -0.52
VPS33B-205ENST00000556096 ZNF726P1Q15940 193 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 ACSM6Q6P461 480 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 OR10W1Q8NGF6 305 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 C10orf105Q8TEF2 133 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 CFHR4Q92496 578 aa11.81□□□□□ -0.52
VPS33B-205ENST00000556096 RCC1LQ96I51 464 aaKnown RBP11.81□□□□□ -0.52
VPS33B-205ENST00000556096 EIF5A2Q9GZV4 153 aaKnown RBP11.81□□□□□ -0.52
VPS33B-205ENST00000556096 LSM4Q9Y4Z0 139 aaKnown RBP11.81□□□□□ -0.52
VPS33B-205ENST00000556096 SMCO3A2RU48 225 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms