RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 H3BP45 60 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 HMGN4O00479 90 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 SYNGR2O43760 224 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TPST1O60507 370 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 PFDN1O60925 122 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 UBL3O95164 117 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ATP6V1G2O95670 118 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 SNAP29O95721 258 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 IGKV1D-16P01601 117 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 IGHG2P01859 326 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 IFI30P13284 250 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 GTF2F2P13984 249 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 S100A1P23297 94 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 FOXA1P55317 472 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 DEFA1P59665 94 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 DEFA3P59666 94 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 AP3S2P59780 193 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ARPC4P59998 168 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CXCR4P61073 352 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 LSM6P62312 80 aaKnown RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ENDOGQ14249 297 aaKnown RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 EBPQ15125 230 aaKnown RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TNXAQ16473 311 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TBC1D28Q2M2D7 210 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ZNF791Q3KP31 576 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TMEM176BQ3YBM2 270 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CCDC58Q4VC31 144 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 SPIN3Q5JUX0 258 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ACTL10Q5JWF8 245 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CLEC12AQ5QGZ9 265 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 LDLRAD2Q5SZI1 272 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 C1orf140Q5VVS0 124 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 XKRXQ6PP77 449 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 LRRN1Q6UXK5 716 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 RASSF6Q6ZTQ3 369 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 AAED1Q7RTV5 226 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 VN1R4Q7Z5H5 301 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 MARCH3Q86UD3 253 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CLECL1Q8IZS7 167 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 C17orf78Q8N4C9 275 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ACBD7Q8N6N7 88 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CLDN22Q8N7P3 220 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ZNF676Q8N7Q3 588 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CNEP1R1Q8N9A8 125 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 SPERTQ8NA61 448 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 OR5D14Q8NGL3 314 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 OR4C13Q8NGP0 309 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 OR2T27Q8NH04 317 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 OR8S1Q8NH09 359 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 OR5J2Q8NH18 312 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 THEM6Q8WUY1 208 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CANT1Q8WVQ1 401 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 PYDC1Q8WXC3 89 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CACNG8Q8WXS5 425 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 C11orf40Q8WZ69 217 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 BORCS5Q969J3 196 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 FXYD5Q96DB9 178 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 SLC25A44Q96H78 314 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 FMC1Q96HJ9 113 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CNBD2Q96M20 576 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ERMAPQ96PL5 475 aaPredicted RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TM2D3Q9BRN9 247 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 MND1Q9BWT6 205 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TSSK6Q9BXA6 273 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 BCL2L14Q9BZR8 327 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 GABARAPL1Q9H0R8 117 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 DSN1Q9H410 356 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 RNF122Q9H9V4 155 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 IL20Q9NYY1 176 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TVP23BQ9NYZ1 205 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 ZNF492Q9P255 531 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CRCT1Q9UGL9 99 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CD300AQ9UGN4 299 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 CACFD1Q9UGQ2 172 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 SSR3Q9UNL2 185 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 C15orf41Q9Y2V0 281 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 NOSIPQ9Y314 301 aaKnown RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 V9GYQ6 96 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 MGAMO43451 1857 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 MYH9P35579 1960 aaKnown RBP1.17□□□□□ -2.22
LIMA1-209ENST00000552008 MYH10P35580 1976 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 SHROOM3Q8TF72 1996 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 PTPRFP10586 1907 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 UTRNP46939 3433 aa1.17□□□□□ -2.22
LIMA1-209ENST00000552008 TANC1Q9C0D5 1861 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 PRR14LQ5THK1 2151 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 IGLV3-32A0A0A0MS00 114 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 A0A1B0GWA3 101 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 TCRBV3S1A0A5B6 114 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 PGPA6NDG6 321 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 OR6C6A6NF89 314 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 GGT3PA6NGU5 568 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 METTL15A6NJ78 407 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 CLDN24A6NM45 220 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 C10orf142B7Z368 130 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 EEF1E1-BLOC1S5C9J1V9 151 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 C4orf51C9J302 202 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 K7EPK0 472 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 M0QXV9 152 aa1.16□□□□□ -2.22
LIMA1-209ENST00000552008 KPNA4O00629 521 aaPredicted RBP1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms