RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 CDKN1AP38936 164 aa9□□□□□ -0.97
CUX1-212ENST00000547394 CD81P60033 236 aa9□□□□□ -0.97
CUX1-212ENST00000547394 RBMS3Q6XE24 437 aaKnown RBP9□□□□□ -0.97
CUX1-212ENST00000547394 SLC16A13Q7RTY0 426 aa9□□□□□ -0.97
CUX1-212ENST00000547394 OR4F5Q8NH21 305 aa9□□□□□ -0.97
CUX1-212ENST00000547394 NANPQ8TBE9 248 aa9□□□□□ -0.97
CUX1-212ENST00000547394 MBD3L1Q8WWY6 194 aa9□□□□□ -0.97
CUX1-212ENST00000547394 OR4F4Q96R69 305 aa9□□□□□ -0.97
CUX1-212ENST00000547394 WDR83OSQ9Y284 106 aa9□□□□□ -0.97
CUX1-212ENST00000547394 PRSS46E5RG02 174 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 OR2C1O95371 312 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 HRASP01112 189 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 HSPB1P04792 205 aaKnown RBP8.99□□□□□ -0.97
CUX1-212ENST00000547394 IGHV1-8P0DP01 117 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 HABP2Q14520 560 aaPredicted RBP8.99□□□□□ -0.97
CUX1-212ENST00000547394 PDLIM3Q53GG5 364 aaPredicted RBP8.99□□□□□ -0.97
CUX1-212ENST00000547394 ZNF833PQ6ZTB9 187 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 NIPSNAP3BQ9BS92 247 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 LINC00574Q9H8X3 128 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 PLEKHA3Q9HB20 300 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 UPK2O00526 184 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 KIR2DS2P43631 304 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 CDC34P49427 236 aaPredicted RBP8.99□□□□□ -0.97
CUX1-212ENST00000547394 MEF2CQ06413 473 aaPredicted RBP8.99□□□□□ -0.97
CUX1-212ENST00000547394 TMEM155Q4W5P6 130 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 KHDC3LQ587J8 217 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 SEPSECSQ9HD40 501 aaKnown RBP8.99□□□□□ -0.97
CUX1-212ENST00000547394 RAB9BQ9NP90 201 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 ONECUT1Q9UBC0 465 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 PXMP4Q9Y6I8 212 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 ZNF462Q96JM2 2506 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 USP24Q9UPU5 2620 aa8.99□□□□□ -0.97
CUX1-212ENST00000547394 FOXH1O75593 365 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ATP5G3P48201 142 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 DLX6P56179 175 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 RAB5BP61020 215 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 SSBP2P81877 361 aaPredicted RBP8.98□□□□□ -0.97
CUX1-212ENST00000547394 ATP6V1FQ16864 119 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 CST9LP1Q5W188 147 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 DPPA3Q6W0C5 159 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.98□□□□□ -0.97
CUX1-212ENST00000547394 NECAP1Q8NC96 275 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ABHD5Q8WTS1 349 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 FAM216AQ8WUB2 273 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 FLYWCH2Q96CP2 140 aaKnown RBP8.98□□□□□ -0.97
CUX1-212ENST00000547394 DERL1Q9BUN8 251 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 GGTLC1Q9BX51 225 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 FOXA2Q9Y261 457 aaPredicted RBP8.98□□□□□ -0.97
CUX1-212ENST00000547394 IGKV1OR2-108A0A075B7D4 117 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 TGIF2-C20orf24A0A0A6YYL0 155 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 TRAV1-1A0A0B4J248 108 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 A0A1B0GW64 132 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 PGPEP1LA6NFU8 196 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 DLL1O00548 723 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 KBTBD11O94819 623 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 APOA2P02652 100 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 HNF1AP20823 631 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 VWC2Q2TAL6 325 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 TGIF2LXQ8IUE1 241 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 PNKDQ8N490 385 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 OR2T6Q8NHC8 308 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 NABP2Q9BQ15 211 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ACTR3CQ9C0K3 210 aaPredicted RBP8.98□□□□□ -0.97
CUX1-212ENST00000547394 NCOR1P1Q9H4R4 102 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 CTXND1A0A1B0GTU2 59 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ITGB1BP1O14713 200 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 S100A6P06703 90 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ARF6P62330 175 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 GNB1P62873 340 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 KLRD1Q13241 179 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 EFNB3Q15768 340 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ADIRFQ15847 76 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 RUSC1-AS1Q66K80 236 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 UNQ6494/PRO21346Q6UXR6 183 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 OR10A7Q8NGE5 316 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 OR9G1Q8NH87 305 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ACY3Q96HD9 319 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 ADTRPQ96IZ2 230 aa8.98□□□□□ -0.97
CUX1-212ENST00000547394 C22orf46C9J442 243 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 CXCL1P09341 107 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 ARL14EPLP0DKL9 152 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 MEF2BQ02080 365 aaPredicted RBP8.97□□□□□ -0.97
CUX1-212ENST00000547394 AARDQ4LEZ3 155 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 HCP5Q6MZN7 132 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 ZNF841Q6ZN19 808 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 TVP23CQ96ET8 276 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 SMIM7Q9BQ49 75 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 COMMD5Q9GZQ3 224 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 ZNF430Q9H8G1 570 aaPredicted RBP8.97□□□□□ -0.97
CUX1-212ENST00000547394 VAX2Q9UIW0 290 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 A0A1W2PPV4 95 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 C1orf196B1AJZ1 125 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 IL6RP08887 468 aaPredicted RBP8.97□□□□□ -0.97
CUX1-212ENST00000547394 GNLYP22749 145 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 LDLRAD2Q5SZI1 272 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 STPG3Q8N7X2 389 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 OR52E5Q8NH55 327 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 DOK5Q9P104 306 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 TIMM9Q9Y5J7 89 aa8.97□□□□□ -0.97
CUX1-212ENST00000547394 USP9YO00507 2555 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms