RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 UQCRFS1P47985 274 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 HOXA1P49639 335 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 PDLIM4P50479 330 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 PPT1P50897 306 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 RPL8P62917 257 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 ERHP84090 104 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 ZNF616Q08AN1 781 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 TMEM267Q0VDI3 215 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 IZUMO4Q1ZYL8 232 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 TMEM249Q2WGJ8 235 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 MINOS1Q5TGZ0 78 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 CCDC144NLQ6NUI1 221 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 THNSL2Q86YJ6 484 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 MMD2Q8IY49 270 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 SVBPQ8N300 66 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 PCNPQ8WW12 178 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 MBD3L1Q8WWY6 194 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 CACNG8Q8WXS5 425 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 LEAP2Q969E1 77 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 BSCL2Q96G97 398 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 OR4C12Q96R67 309 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 JMJD8Q96S16 334 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 SRSF8Q9BRL6 282 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 MRPL20Q9BYC9 149 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 COMMD5Q9GZQ3 224 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 MS4A7Q9GZW8 240 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 HRH4Q9H3N8 390 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 UBTD1Q9HAC8 227 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 PLEKHA3Q9HB20 300 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 NPVFQ9HCQ7 196 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 CARHSP1Q9Y2V2 147 aaKnown RBP5.02□□□□□ -1.61
SYNE1-239ENST00000545694 INSIG2Q9Y5U4 225 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 MINOS1-NBL1R4GNA1 71 aa5.02□□□□□ -1.61
SYNE1-239ENST00000545694 NAV3Q8IVL0 2385 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 MED13LQ71F56 2210 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 A0A1W2PPE3 182 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 C15orf62A8K5M9 175 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 RNASEK-C17orf49H0YIS7 233 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 H3BP45 60 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 PLXNB1O43157 2135 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 FOXH1O75593 365 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 SNAPINO95295 136 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 IFNA1P01562 189 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 PAX1P15863 534 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 MDKP21741 143 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-239ENST00000545694 NPY1RP25929 384 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 HTR1DP28221 377 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 CD1BP29016 333 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 GPX4P36969 197 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-239ENST00000545694 SLURP1P55000 103 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 DSCR9P59020 149 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 RPS16P62249 146 aaKnown RBP5.01□□□□□ -1.61
SYNE1-239ENST00000545694 BSXQ3C1V8 233 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 C2orf83Q53S99 150 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 TMEM41BQ5BJD5 291 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 OR8G2PQ6IF36 304 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 ETV3LQ6ZN32 361 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 TMEM182Q6ZP80 229 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-239ENST00000545694 SSX9Q7RTT3 188 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 HAPLN4Q86UW8 402 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 SLC24A4Q8NFF2 622 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 BPIFCQ8NFQ6 507 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 OR10G4Q8NGN3 311 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 FAM213BQ8TBF2 198 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 SUN5Q8TC36 379 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 IGFBPL1Q8WX77 278 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 RPEQ96AT9 228 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 C19orf24Q9BVV8 132 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 SH3BGRL3Q9H299 93 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 TREM1Q9NP99 234 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 NDUFA4L2Q9NRX3 87 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 DPM3Q9P2X0 92 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 WDR83OSQ9Y284 106 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 RELNP78509 3460 aa5.01□□□□□ -1.61
SYNE1-239ENST00000545694 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.01□□□□□ -1.61
SYNE1-239ENST00000545694 UBR5O95071 2799 aaPredicted RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 ARHGAP32A7KAX9 2087 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 IGHV1-3A0A0C4DH29 117 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 TEX50A0A1B0GTY4 177 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 UBE2L5PA0A1B0GUS4 154 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 MEX3AA1L020 520 aaKnown RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 ODF3BA8MYP8 253 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 F8W036 122 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 LYNX1G3V0Z9 82 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 LY6LH3BQJ8 138 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 CORTO00230 105 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 CYB5BO43169 146 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 ACTL6BO94805 426 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 NXPH3O95157 252 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 IGHV3-7P01780 117 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 IGHV2-5P01817 119 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 IGKV1-16P04430 117 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 HSPB1P04792 205 aaKnown RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 IFNA4P05014 189 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 SAA1P0DJI8 122 aaPredicted RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 LYNX1P0DP58 116 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 OPRK1P41145 380 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 LINC00205P59089 165 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 PAX2Q02962 417 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 ARL16Q0P5N6 197 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms