RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 A0A1W2PRM7 423 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 GALR1P47211 349 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 SLC35B1P78383 322 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 ACOT6Q3I5F7 207 aaPredicted RBP13.82□□□□□ -0.2
USP28-208ENST00000540438 FAM78BQ5VT40 261 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 OR2T6Q8NHC8 308 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 TPSG1Q9NRR2 321 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 TRBV20OR9-2A0A075B6H5 130 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 F2RL2O00254 374 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 LY86O95711 162 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 FRMD6-AS1P0C7T7 363 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 TIMP3P35625 211 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 IGFL3Q6UXB1 125 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 MIR17HGQ75NE6 70 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 SLC24A4Q8NFF2 622 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 SGK494Q96LW2 274 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 METTL1Q9UBP6 276 aaKnown RBP13.82□□□□□ -0.2
USP28-208ENST00000540438 CGB3P0DN86 165 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 CGB7P0DN87 165 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 TNFSF4P23510 183 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 CEACAM8P31997 349 aaPredicted RBP13.82□□□□□ -0.2
USP28-208ENST00000540438 MZT1Q08AG7 82 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 C1QL4Q86Z23 238 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 SPACA3Q8IXA5 215 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 STPG3Q8N7X2 389 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 GGACTQ9BVM4 153 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 SMDT1Q9H4I9 107 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 DYNLRB1Q9NP97 96 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 IL19Q9UHD0 177 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 NAT8Q9UHE5 227 aa13.82□□□□□ -0.2
USP28-208ENST00000540438 YTHDF2Q9Y5A9 579 aaKnown RBP13.82□□□□□ -0.2
USP28-208ENST00000540438 SLC17A3O00476 420 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 KBTBD11O94819 623 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 IL6RP08887 468 aaPredicted RBP13.81□□□□□ -0.2
USP28-208ENST00000540438 ZNF788Q6ZQV5 615 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 NHLRC2Q8NBF2 726 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 SFXN3Q9BWM7 321 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 TOLLIPQ9H0E2 274 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 FUT9Q9Y231 359 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 IGKV1OR2-108A0A075B7D4 117 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 C17orf112F2Z3M2 114 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 SAA1P0DJI8 122 aaPredicted RBP13.81□□□□□ -0.2
USP28-208ENST00000540438 GNB2P62879 340 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 OR5I1Q13606 314 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 TMEM200BQ69YZ2 307 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 DDB2Q92466 427 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 PRO1933Q9H354 126 aa13.81□□□□□ -0.2
USP28-208ENST00000540438 TRAV5A0A0B4J249 113 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 C17orf100A8MU93 164 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 WNT2P09544 360 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 NEIL1Q96FI4 390 aaPredicted RBP13.8□□□□□ -0.2
USP28-208ENST00000540438 UHRF2Q96PU4 802 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 RBFOX2O43251 390 aaKnown RBP eCLIP13.8□□□□□ -0.2
USP28-208ENST00000540438 OR4X1Q8NH49 305 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 HARBI1Q96MB7 349 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 CSMD2Q7Z408 3487 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 CACNA1AO00555 2505 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 C15orf61A6NNL5 157 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 H3BTX0 84 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 ATP6V1FQ16864 119 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 RUSC1-AS1Q66K80 236 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 OR10X1Q8NGY0 326 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 CTSZQ9UBR2 303 aa13.8□□□□□ -0.2
USP28-208ENST00000540438 CD33P20138 364 aa13.79□□□□□ -0.2
USP28-208ENST00000540438 CD24P25063 80 aa13.79□□□□□ -0.2
USP28-208ENST00000540438 CDSNQ15517 529 aa13.79□□□□□ -0.2
USP28-208ENST00000540438 MORN5Q5VZ52 161 aa13.79□□□□□ -0.2
USP28-208ENST00000540438 HCP5Q6MZN7 132 aa13.79□□□□□ -0.2
USP28-208ENST00000540438 PPP1R2P9O14990 202 aa13.79□□□□□ -0.2
USP28-208ENST00000540438 S100A2P29034 98 aa13.79□□□□□ -0.2
USP28-208ENST00000540438 HSPE1P61604 102 aaKnown RBP13.79□□□□□ -0.2
USP28-208ENST00000540438 CELSR2Q9HCU4 2923 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 A0A087WWC5 75 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 HOXA5P20719 270 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 CNTFRP26992 372 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 EFNB3Q15768 340 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 CYP2G1PQ6ZSU1 146 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 FLNCQ14315 2725 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 DVL1O14640 695 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 OR7C2O60412 319 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 OR10J1P30954 320 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 PLEKHA3Q9HB20 300 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 GAR1Q9NY12 217 aaKnown RBP13.78□□□□□ -0.2
USP28-208ENST00000540438 CUBNO60494 3623 aa13.78□□□□□ -0.2
USP28-208ENST00000540438 PIGBOS1A0A0B4J2F0 54 aa13.77□□□□□ -0.2
USP28-208ENST00000540438 HLA-DRB5Q30154 266 aa13.77□□□□□ -0.2
USP28-208ENST00000540438 OR5B12Q96R08 314 aa13.77□□□□□ -0.2
USP28-208ENST00000540438 IMMP2LQ96T52 175 aa13.77□□□□□ -0.2
USP28-208ENST00000540438 GSX1Q9H4S2 264 aaPredicted RBP13.77□□□□□ -0.2
USP28-208ENST00000540438 RPUSD1Q9UJJ7 312 aaKnown RBP13.77□□□□□ -0.2
USP28-208ENST00000540438 TEX50A0A1B0GTY4 177 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 SLC25A17O43808 307 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 COX7A1P24310 79 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 PSG5Q15238 335 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 TRAT1Q6PIZ9 186 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 ZNF439Q8NDP4 499 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 OR10A7Q8NGE5 316 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 LINC00479Q96M42 142 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 TIMM9Q9Y5J7 89 aa13.77□□□□□ -0.21
USP28-208ENST00000540438 E7EQL1 145 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms