RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 PNKDQ8N490 385 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 DRAM1Q8N682 238 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 MBD3L1Q8WWY6 194 aa9.07□□□□□ -0.96
CLIP1-209ENST00000537178 TMEM187Q14656 261 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 BMPERQ8N8U9 685 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 IGHV1-69-2A0A0G2JMI3 117 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 NKX2-8O15522 239 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 EIF3GO75821 320 aaKnown RBP eCLIP9.06□□□□□ -0.96
CLIP1-209ENST00000537178 FTH1P19P0C7X4 201 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 PGPEP1Q9NXJ5 209 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 CBLN1P23435 193 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 CYP2G1PQ6ZSU1 146 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 LINC00305Q7Z4B0 112 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 OSR1Q8TAX0 266 aaPredicted RBP9.06□□□□□ -0.96
CLIP1-209ENST00000537178 DIDO1Q9BTC0 2240 aaKnown RBP9.06□□□□□ -0.96
CLIP1-209ENST00000537178 A0A1B0GUT8 65 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 A0A1B0GW15 77 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 B9A039 149 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 M0R381 172 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 IGKV3-20P01619 116 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 CELA2AP08217 269 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 CTAG1AP78358 180 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 CYB5R2Q6BCY4 276 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 SCGB3A1Q96QR1 104 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 PILRAQ9UKJ1 303 aa9.06□□□□□ -0.96
CLIP1-209ENST00000537178 IGHV3-35A0A0C4DH35 117 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 A0A0G2JLM5 398 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 TRBV7-9A0A0J9YWB2 115 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 LOC390937A0A1W2PQ73 354 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 RBMY1BA6NDE4 496 aaKnown RBP9.05□□□□□ -0.96
CLIP1-209ENST00000537178 RBMY1EA6NEQ0 496 aaKnown RBP9.05□□□□□ -0.96
CLIP1-209ENST00000537178 TRGV3P03979 118 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 RBMY1DP0C7P1 496 aaKnown RBP9.05□□□□□ -0.96
CLIP1-209ENST00000537178 RBMY1A1P0DJD3 496 aaKnown RBP9.05□□□□□ -0.96
CLIP1-209ENST00000537178 RBMY1CP0DJD4 496 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 SNAI3Q3KNW1 292 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 Q6AWC8 147 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 ZNF818PQ6ZRF7 136 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 GGACTQ9BVM4 153 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 RSPO3Q9BXY4 272 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-209ENST00000537178 MPTX1A8MV57 137 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 ERGP11308 486 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 CNTFRP26992 372 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 UNQ9370/PRO34162Q6UXP9 181 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 FAM181AQ8N9Y4 354 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 POC1AQ8NBT0 407 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 ZNF418Q8TF45 676 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-209ENST00000537178 C18orf15Q96N68 181 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 GPHA2Q96T91 129 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 A0A1B0GV90 55 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 MOSP00540 346 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 OR11H4Q8NGC9 324 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 RPRMQ9NS64 109 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 TMEM14DPA8MWL7 114 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 H2BFSP57053 126 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 LEAP2Q969E1 77 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 TUBA4BQ9H853 241 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 FOXJ2Q9P0K8 574 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 FOXD3Q9UJU5 478 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-209ENST00000537178 HS3ST3B1Q9Y662 390 aa9.05□□□□□ -0.96
CLIP1-209ENST00000537178 DNAH14Q0VDD8 3507 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 PIN1P1O15428 100 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 IL6RP08887 468 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-209ENST00000537178 WDR82Q6UXN9 313 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 NIT1Q86X76 327 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 KIR3DL3Q8N743 410 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 LRTM2Q8N967 370 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 RCC1LQ96I51 464 aaKnown RBP9.04□□□□□ -0.96
CLIP1-209ENST00000537178 WFIKKN1Q96NZ8 548 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 IFI27L2Q9H2X8 130 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 SEMA5BQ9P283 1151 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 NPIPB13A6NJU9 1138 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 NHLRC3Q5JS37 347 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 PEAR1Q5VY43 1037 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-209ENST00000537178 CIARTQ8N365 385 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-209ENST00000537178 TOMM7Q9P0U1 55 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 DPM3Q9P2X0 92 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 APOHP02749 345 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-209ENST00000537178 ZNF708P17019 499 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 FOXL2P58012 376 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 CFAP161Q6P656 301 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 C11orf68Q9H3H3 251 aaKnown RBP9.04□□□□□ -0.96
CLIP1-209ENST00000537178 IL36BQ9NZH7 164 aa9.04□□□□□ -0.96
CLIP1-209ENST00000537178 DENND4CQ5VZ89 1909 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 ATG2BQ96BY7 2078 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 IGHV3OR16-13A0A075B7E8 117 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 IGHV3-74A0A0B4J1X5 117 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 IGHV3-48P01763 117 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 TYMSP04818 313 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 TBR1Q16650 682 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 SAMD13Q5VXD3 122 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 ZNF324BQ6AW86 544 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-209ENST00000537178 VKORC1L1Q8N0U8 176 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 CACNA1DQ01668 2161 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 ATXN7O15265 892 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-209ENST00000537178 TEX45Q8NA69 505 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 G6PC2Q9NQR9 355 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 EGR1P18146 543 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 FOXC2Q99958 501 aa9.03□□□□□ -0.96
CLIP1-209ENST00000537178 TMEM74BQ9NUR3 256 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms