RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 HOXA1P49639 335 aaPredicted RBP12.69□□□□□ -0.38
TRIM3-213ENST00000533309 RPL23AP62750 156 aaKnown RBP12.69□□□□□ -0.38
TRIM3-213ENST00000533309 TNXAQ16473 311 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 SPNS3Q6ZMD2 512 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 TMEM219Q86XT9 240 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 OR10W1Q8NGF6 305 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 BSCL2Q96G97 398 aaPredicted RBP12.69□□□□□ -0.38
TRIM3-213ENST00000533309 ZNF48Q96MX3 618 aaPredicted RBP12.69□□□□□ -0.38
TRIM3-213ENST00000533309 OR4C12Q96R67 309 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 SMR3AQ99954 134 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 ARL6Q9H0F7 186 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 YAE1D1Q9NRH1 226 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 HIVEP2P31629 2446 aa12.69□□□□□ -0.38
TRIM3-213ENST00000533309 A0A0D9SG52 128 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 A6NDX4 124 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 S100A11P31949 105 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 NUP62P37198 522 aaPredicted RBP12.68□□□□□ -0.38
TRIM3-213ENST00000533309 EWSR1Q01844 656 aaKnown RBP eCLIP12.68□□□□□ -0.38
TRIM3-213ENST00000533309 TUSC1Q2TAM9 212 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 CLEC9AQ6UXN8 241 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 RBM14Q96PK6 669 aaKnown RBP12.68□□□□□ -0.38
TRIM3-213ENST00000533309 SLC25A33Q9BSK2 321 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 PLEKHA3Q9HB20 300 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 HEYLQ9NQ87 328 aaPredicted RBP12.68□□□□□ -0.38
TRIM3-213ENST00000533309 C1RLQ9NZP8 487 aa12.68□□□□□ -0.38
TRIM3-213ENST00000533309 NSD1Q96L73 2696 aaPredicted RBP12.68□□□□□ -0.38
TRIM3-213ENST00000533309 RPL27AP46776 148 aaKnown RBP12.67□□□□□ -0.38
TRIM3-213ENST00000533309 GNB1P62873 340 aa12.67□□□□□ -0.38
TRIM3-213ENST00000533309 NHLH2Q02577 135 aa12.67□□□□□ -0.38
TRIM3-213ENST00000533309 TMEM267Q0VDI3 215 aaPredicted RBP12.67□□□□□ -0.38
TRIM3-213ENST00000533309 SPANXN5Q5MJ07 72 aa12.67□□□□□ -0.38
TRIM3-213ENST00000533309 TMEM14EPQ6UXP3 125 aa12.67□□□□□ -0.38
TRIM3-213ENST00000533309 TEX29Q8N6K0 151 aa12.67□□□□□ -0.38
TRIM3-213ENST00000533309 TMEM170AQ8WVE7 144 aa12.67□□□□□ -0.38
TRIM3-213ENST00000533309 PRDM13Q9H4Q3 707 aa12.67□□□□□ -0.38
TRIM3-213ENST00000533309 C15orf62A8K5M9 175 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 INS-IGF2F8WCM5 200 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 CST7O76096 145 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 ACTL6BO94805 426 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 LY86O95711 162 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 IGHV4-59P01825 116 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 NDPQ00604 133 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 WT1-ASQ06250 92 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 OPCMLQ14982 345 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 LY6EQ16553 131 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 HAPLN4Q86UW8 402 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 C5orf56Q8N8D9 126 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 SRSF12Q8WXF0 261 aaKnown RBP12.66□□□□□ -0.38
TRIM3-213ENST00000533309 SLC25A31Q9H0C2 315 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 HIPK2Q9H2X6 1198 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 MOB4Q9Y3A3 225 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 IGLC7A0M8Q6 106 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 TEX22C9J3V5 150 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 BCL2L11O43521 198 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 HLA-DRB1P01911 266 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 AMY1AP04745 511 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 METTL15P1P0C7V9 234 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 IER3P46695 156 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 BSXQ3C1V8 233 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 TMUB1Q9BVT8 246 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 ZC4H2Q9NQZ6 224 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 FBXL17Q9UF56 701 aa12.66□□□□□ -0.38
TRIM3-213ENST00000533309 STRAPQ9Y3F4 350 aaKnown RBP12.66□□□□□ -0.38
TRIM3-213ENST00000533309 A0A1W2PN81 502 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 PMS2P5A8MQ11 134 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 CHRNA7P36544 502 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 SULT1A1P50225 295 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 CX3CL1P78423 397 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 BAXQ07812 192 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 ARL16Q0P5N6 197 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 ZNF562Q6V9R5 426 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 Q6YL49 198 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 ENY2Q9NPA8 101 aa12.65□□□□□ -0.38
TRIM3-213ENST00000533309 IGHV7-81A0A0B4J1V7 117 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 FGF16O43320 207 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 LY6G6DO95868 133 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 FXYD3Q14802 87 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 STX12Q86Y82 276 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 STPG2Q8N412 459 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 SLC24A4Q8NFF2 622 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 ARPC5LQ9BPX5 153 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 HSPB9Q9BQS6 159 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 SMIM3Q9BZL3 60 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 CYTL1Q9NRR1 136 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 TMEM160Q9NX00 188 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 PITPNC1Q9UKF7 332 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 U3KQ87 197 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 F8P00451 2351 aa12.64□□□□□ -0.39
TRIM3-213ENST00000533309 KANTRA0A1W2PQU2 76 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 CNIH1O95406 144 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 IFNA10P01566 189 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 RNASE2P10153 161 aaKnown RBP12.63□□□□□ -0.39
TRIM3-213ENST00000533309 AREGP15514 252 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 SRP14P37108 136 aaKnown RBP12.63□□□□□ -0.39
TRIM3-213ENST00000533309 TMEM217Q8N7C4 229 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 ARPC1AQ92747 370 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 RASL11BQ9BPW5 248 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 WFDC1Q9HC57 220 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 FBXO7Q9Y3I1 522 aa12.63□□□□□ -0.39
TRIM3-213ENST00000533309 SH2D7A6NKC9 451 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms